Evidence map›Paper›PMID 31672963›Full record

ArticleNature communications2019

Using slow frame rate imaging to extract fast receptive fields.

Omer Mano, Matthew S Creamer, Catherine A Matulis, Emilio Salazar-Gatzimas, Juyue Chen, Jacob A Zavatone-Veth, Damon A Clark

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Omer ManoDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0003-2606-8567
Matthew S CreamerInterdepartmental Neuroscience Program, Yale University, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-9458-0629
Catherine A MatulisDepartment of Physics, Yale University, New Haven, CT, 06511, USA.
Emilio Salazar-GatzimasInterdepartmental Neuroscience Program, Yale University, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0001-9140-4649
Juyue ChenInterdepartmental Neuroscience Program, Yale University, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0003-2176-4723
Jacob A Zavatone-VethDepartment of Physics, Yale University, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-4060-1738
Damon A ClarkDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, 06511, USA. damon.clark@yale.edu.ORCID http://orcid.org/0000-0001-8487-700X

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007499 · NIGMS · YALE UNIVERSITY · PI CARLSON, JOHN R, REINKE, VALERIE J · 1985 to 2022
$13.9M
Yale Core Grant for Vision ResearchP30EY026878 · NEI · YALE UNIVERSITY · PI In-Jung Kim · 2016 to 2026
$7.1M
Integrating visual counterevidence to detect self-motion in a small visual circuitR01EY026555 · NEI · YALE UNIVERSITY · PI CLARK, DAMON ALISTAIR · 2016 to 2025
$4.0M
Visual Science Training GrantT32EY022312 · NEI · YALE UNIVERSITY · PI ZHOU, Z JIMMY · 2012 to 2021
$1.3M
NEI NIH HHS P30 EY026878NEI NIH HHS R01 EY026555NEI NIH HHS T32 EY022312NIGMS NIH HHS T32 GM007499U.S. Department of Health & Human Services | National Institutes of Health (NIH) EY022312U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30EY026878U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01EY026555
6 · The paper itself

Abstract

In functional imaging, large numbers of neurons are measured during sensory stimulation or behavior. This data can be used to map receptive fields that describe neural associations with stimuli or with behavior. The temporal resolution of these receptive fields has traditionally been limited by image acquisition rates. However, even when acquisitions scan slowly across a population of neurons, individual neurons may be measured at precisely known times. Here, we apply a method that leverages the timing of neural measurements to find receptive fields with temporal resolutions higher than the image acquisition rate. We use this temporal super-resolution method to resolve fast voltage and glutamate responses in visual neurons in Drosophila and to extract calcium receptive fields from cortical neurons in mammals. We provide code to easily apply this method to existing datasets. This method requires no specialized hardware and can be used with any optical indicator of neural activity.

Indexed as

AnimalsCalciumCerebral CortexDrosophilaFunctional NeuroimagingGlutamic AcidNeuronsOptical ImagingPhotic StimulationSpatio-Temporal AnalysisTupaiidaeCalciumGlutamic Acid

Identifiers

PMID31672963
PMCPMC6823504

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.