Evidence map›Paper›PMID 31672915›Full record

ArticleScience (New York, N.Y.)2019

Structure of the RSC complex bound to the nucleosome.

Youpi Ye, Hao Wu, Kangjing Chen, Cedric R Clapier, Naveen Verma, Wenhao Zhang, Haiteng Deng, Bradley R Cairns, Ning Gao, Zhucheng Chen

Open access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 1 pooled it
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 1 synthesis or guideline pooled it, 132 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Cryo-EM structure of ALC1 in an open conformation bound to a PARylated nucleosome.Acta crystallographica. Section D, Structural biology · 2026
    Article
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Youpi YeMOE Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, P.R. China.ORCID 0000-0002-0001-1290
Hao WuSchool of Life Science, Tsinghua University, Beijing 100084, P.R. China.ORCID 0000-0002-1070-0292
Kangjing ChenMOE Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, P.R. China.ORCID 0000-0002-4936-2761
Cedric R ClapierHoward Hughes Medical Institute and Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.
Naveen VermaHoward Hughes Medical Institute and Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA.ORCID 0000-0003-4211-579X
Wenhao ZhangSchool of Life Science, Tsinghua University, Beijing 100084, P.R. China.ORCID 0000-0002-9174-4077
Haiteng DengSchool of Life Science, Tsinghua University, Beijing 100084, P.R. China.ORCID 0000-0001-9496-1280
Bradley R CairnsHoward Hughes Medical Institute and Department of Oncological Sciences, Huntsman Cancer Institute, University of Utah School of Medicine, Salt Lake City, UT 84112, USA. zhucheng_chen@tsinghua.edu.cn gaon@pku.edu.cn brad.cairns@hci.utah.edu.
Ning GaoState Key Laboratory of Membrane Biology, Peking-Tsinghua Joint Center for Life Sciences, School of Life Sciences, Peking University, Beijing 100871, China. zhucheng_chen@tsinghua.edu.cn gaon@pku.edu.cn brad.cairns@hci.utah.edu.
Zhucheng ChenMOE Key Laboratory of Protein Science, Tsinghua University, Beijing 100084, P.R. China. zhucheng_chen@tsinghua.edu.cn gaon@pku.edu.cn brad.cairns@hci.utah.edu.ORCID 0000-0002-8684-0339
Tsinghua University · CNHuntsman Cancer Institute · USCenter for Life Sciences · CNNational Institute of Biological Sciences, Beijing · CNPeking University · CN

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Epigenetic Mechanisms Driving Synovial SarcomagenesisR01CA201396 · NCI · UNIVERSITY OF UTAH · PI CAIRNS, BRADLEY R., JONES, KEVIN BRUCE · 2017 to 2021
$1.7M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA042014NCI NIH HHS R01 CA201396
6 · The paper itself

Abstract

The RSC complex remodels chromatin structure and regulates gene transcription. We used cryo-electron microscopy to determine the structure of yeast RSC bound to the nucleosome. RSC is delineated into the adenosine triphosphatase motor, the actin-related protein module, and the substrate recruitment module (SRM). RSC binds the nucleosome mainly through the motor, with the auxiliary subunit Sfh1 engaging the H2A-H2B acidic patch to enable nucleosome ejection. SRM is organized into three substrate-binding lobes poised to bind their respective nucleosomal epitopes. The relative orientations of the SRM and the motor on the nucleosome explain the directionality of DNA translocation and promoter nucleosome repositioning by RSC. Our findings shed light on RSC assembly and functionality, and they provide a framework to understand the mammalian homologs BAF/PBAF and the Sfh1 ortholog INI1/BAF47, which are frequently mutated in cancers.

Indexed as

ActinsCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCryoelectron MicroscopyDNA-Binding ProteinsNucleosomesProtein DomainsSaccharomyces cerevisiae ProteinsSMARCB1 ProteinTranscription FactorsActinsBANF1 protein, humanCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneDNA-Binding ProteinsNucleosomesRSC complex, S cerevisiaeSaccharomyces cerevisiae ProteinsSfh1 protein, S cerevisiaeSMARCB1 ProteinSMARCB1 protein, humanTranscription Factors

Identifiers

PMID31672915
PMCPMC8442553
OpenAlexW2982561006

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.