Evidence map›Paper›PMID 31671829›Full record

ArticleViruses2019

Phylodynamic and Phylogeographic Analysis of Hepatitis Delta Virus Genotype 3 Isolated in South America.

Felipe Souza Nogueira-Lima, Luan Felipo Botelho-Souza, Tárcio Peixoto Roca, Alcione Oliveira Dos Santos, Suyane da Costa Oliveira, Jackson Alves da Silva Queiroz, Fabianne Araújo Gomes Dos Santos-Alves, Juan Miguel Villalobos Salcedo, Deusilene Souza Vieira

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Felipe Souza Nogueira-LimaOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. limafsn@hotmail.com.
Luan Felipo Botelho-SouzaOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. luan_botelho@hotmail.com.ORCID 0000-0002-3522-3306
Tárcio Peixoto RocaOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. tarcioroca@hotmail.com.
Alcione Oliveira Dos SantosOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. alcione.m@hotmail.com.
Suyane da Costa OliveiraOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. suyaneoliveira_enf@hotmail.com.
Jackson Alves da Silva QueirozOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. queiroz.jas@gmail.com.
Fabianne Araújo Gomes Dos Santos-AlvesOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. fabianneag@gmail.com.
Juan Miguel Villalobos SalcedoOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. juanitto2001@yahoo.com.br.
Deusilene Souza VieiraOswaldo Cruz Foundation of Rondônia-FIOCRUZ/RO, Porto Velho RO 76812 245, Rondônia, Brazil. deusylenebio@hotmail.com.
Universidade Federal de Rondônia · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The hepatitis delta virus (HDV) is a globally distributed agent, and its genetic variability allows for it to be organized into eight genotypes with different geographic distributions. In South America, genotype 3 (HDV-3) is frequently isolated and responsible for the most severe form of infection. The objective of this study was to evaluate the evolutionary and epidemiological dynamics of HDV-3 over the years and to describe its distribution throughout this continent in an evolutionary perspective. While using Bayesian analysis, with strains being deposited in the Nucleotide database, the most recent common ancestor was dated back to 1964 and phylogenetic analysis indicated that the dispersion may have started in Brazil, spreading to Venezuela and then to Colombia, respectively. Exponential growth in the effective number of infections was observed between the 1950s and 1970s, years after the first report of the presence of HDV on the continent, during the Labrea Black Fever outbreak, which showed that the virus continued to spread, increasing the number of cases decades after the first reports. Subsequently, the analysis showed a decrease in the epidemiological levels of HDV, which was probably due to the implantation of the vaccine against its helper virus, hepatitis B virus, and serological screening methods implemented in the blood banks.

Indexed as

Bayes TheoremEvolution, MolecularGenetic VariationGenotypeHepatitis DHepatitis delta AntigensHepatitis Delta VirusHumansPhylogenyPhylogeographyRNA, ViralSouth AmericaHepatitis delta AntigensRNA, Viralevolutionary dynamicsHDV-3hepatitis delta virusphylodynamics

Identifiers

PMID31671829
PMCPMC6893442
OpenAlexW2982365305

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.