Evidence map›Paper›PMID 31671645›Full record

SynthesisGenes2019

Meta-Analysis of Polymyositis and Dermatomyositis Microarray Data Reveals Novel Genetic Biomarkers.

Jaeseung Song, Daeun Kim, Juyeon Hong, Go Woon Kim, Junghyun Jung, Sejin Park, Hee Jung Park, Jong Wha J Joo, Wonhee Jang

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jaeseung SongDepartment of Life Science, Dongguk University-Seoul, Seoul 04620, Korea. jaeseung6455@gmail.com.ORCID 0000-0003-2247-3194
Daeun KimDepartment of Life Science, Dongguk University-Seoul, Seoul 04620, Korea. as2211453@gmail.com.
Juyeon HongDepartment of Life Science, Dongguk University-Seoul, Seoul 04620, Korea. hjyloling@gmail.com.
Go Woon KimDepartment of Computer Science and Engineering, Dongguk University-Seoul, Seoul 04620, Korea. gowoone@gmail.com.
Junghyun JungDepartment of Life Science, Dongguk University-Seoul, Seoul 04620, Korea. swordbreadjj@gmail.com.
Sejin ParkDepartment of Computer Science and Engineering, Dongguk University-Seoul, Seoul 04620, Korea. sejin8544@gmail.com.
Hee Jung ParkWestern Seoul Center, Korea Basic Science Institute, Seoul 03759, Korea. hjpark8659@kbsi.re.kr.
Jong Wha J JooDepartment of Computer Science and Engineering, Dongguk University-Seoul, Seoul 04620, Korea. jwjjoo@dongguk.edu.
Wonhee JangDepartment of Life Science, Dongguk University-Seoul, Seoul 04620, Korea. wany@dongguk.edu.
Dongguk University · KRKorea Basic Science Institute · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polymyositis (PM) and dermatomyositis (DM) are both classified as idiopathic inflammatory myopathies. They share a few common characteristics such as inflammation and muscle weakness. Previous studies have indicated that these diseases present aspects of an auto-immune disorder; however, their exact pathogenesis is still unclear. In this study, three gene expression datasets (PM: 7, DM: 50, Control: 13) available in public databases were used to conduct meta-analysis. We then conducted expression quantitative trait loci analysis to detect the variant sites that may contribute to the pathogenesis of PM and DM. Six-hundred differentially expressed genes were identified in the meta-analysis (false discovery rate (FDR) < 0.01), among which 317 genes were up-regulated and 283 were down-regulated in the disease group compared with those in the healthy control group. The up-regulated genes were significantly enriched in interferon-signaling pathways in protein secretion, and/or in unfolded-protein response. We detected 10 single nucleotide polymorphisms (SNPs) which could potentially play key roles in driving the PM and DM. Along with previously reported genes, we identified 4 novel genes and 10 SNP-variant regions which could be used as candidates for potential drug targets or biomarkers for PM and DM.

Indexed as

BiomarkersCase-Control StudiesDatabases, GeneticDermatomyositisGene ExpressionGene Expression ProfilingGenetic MarkersGenetic Predisposition to DiseaseHumansInterferonsMyositisPolymorphism, Single NucleotidePolymyositisQuantitative Trait LociUnfolded Protein ResponseBiomarkersGenetic MarkersInterferonsdermatomyositismeta-analysismultiple-phenotype analysispolymyositis

Identifiers

PMID31671645
PMCPMC6895911
OpenAlexW2982438975

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.