Evidence map›Paper›PMID 31671564›Full record

ArticleCancers2019

Secondary Somatic Mutations in G-Protein-Related Pathways and Mutation Signatures in Uveal Melanoma.

Francesca Piaggio, Veronica Tozzo, Cinzia Bernardi, Michela Croce, Roberto Puzone, Silvia Viaggi, Serena Patrone, Annalisa Barla, Domenico Coviello, Martine J Jager and 6 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. The Current State of Systemic Therapy of Metastatic Uveal Melanoma.American journal of clinical dermatology · 2024
    Review
  4. Review
  5. Machine Learning Methods for Gene Selection in Uveal Melanoma.International journal of molecular sciences · 2024
    Article
  6. Interdependence of Molecular Lesions That Drive Uveal Melanoma Metastasis.International journal of molecular sciences · 2023
    Article
  7. Article
  8. Cancers · 2022
    Review
  9. Article
  10. Article
  11. Where Do We Stand in Regularization for Life Science Studies?Journal of computational biology : a journal of computational molecular cell biology · 2022
    Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Article
  18. Update onCancers · 2020
    Review
  19. Uveal Melanoma.Cancers · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Francesca PiaggioTumor Epigenetics; IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy. francesca.piaggio@hsanmartino.it.
Veronica TozzoDIBRIS, University of Genova, 16145 Genova, Italy. veronica.tozzo@dibris.unige.it.ORCID 0000-0001-8538-9198
Cinzia BernardiTumor Epigenetics; IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy. cinzia.bernardi@yahoo.it.
Michela CroceBiotherapy; IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy. michela.croce@hsanmartino.it.
Roberto PuzoneClinical Epidemiology, IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy. roberto.puzone@hsanmartino.it.ORCID 0000-0001-7214-663X
Silvia ViaggiDISTAV, University of Genova, 16132 Genova, Italy. silvia.viaggi@unige.it.ORCID 0000-0002-3732-9462
Serena PatroneIRCCS Istituto G. Gaslini, 16147 Genova, Italy. 3040005@studenti.unige.it.
Annalisa BarlaDIBRIS, University of Genova, 16145 Genova, Italy. annalisa.barla@unige.it.ORCID 0000-0002-3436-035X
Domenico CovielloIRCCS Istituto G. Gaslini, 16147 Genova, Italy. coviello@unige.it.
Martine J JagerLaboratory of Human Genetics, Department of Ophthalmology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands. M.J.Jager@lumc.nl.ORCID 0000-0003-2261-3820
Pieter A van der VeldenLaboratory of Human Genetics, Department of Ophthalmology, Leiden University Medical Center, 2333 ZA Leiden, The Netherlands. P.A.van_der_Velden@lumc.nl.
Michael ZeschnigkInstitute of Human Genetics, University Clinics Essen, University Duisburg-Essen, 45147 Essen, Germany. Michael.zeschnigk@uni-due.de.
Davide CangelosiLaboratory of Molecular Biology, IRCCS Istituto Giannina Gaslini, 16147 Genova, Italy. davide.cangelosi@gmail.com.ORCID 0000-0002-6010-5619
Alessandra EvaLaboratory of Molecular Biology, IRCCS Istituto Giannina Gaslini, 16147 Genova, Italy. alessandraeva@gaslini.org.
Ulrich PfefferTumor Epigenetics; IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy. Ulrich.pfeffer@hsanmartino.it.ORCID 0000-0003-0872-4671
Adriana AmaroTumor Epigenetics; IRCCS Ospedale Policlinico San Martino, 16132 Genova, Italy. adriana.amaro@hsanmartino.it.
Ospedale Policlinico San Martino · ITIstituto Giannina Gaslini · ITLeiden University Medical Center · NLUniversity of Genoa · ITUniversity of Duisburg-Essen · DE

Funding

Associazione Italiana per la Ricerca sul Cancro ID. 21073Compagnia di San Paolo #20067Ministero della Salute 5 x 1000 funds 2016
6 · The paper itself

Abstract

backgroundUveal melanoma (UM), a rare cancer of the eye, is characterized by initiating mutations in the genes G-protein subunit alpha Q (

methodsWe analyzed all the 4125 mutations detected in exome sequencing datasets, comprising a total of 139 Ums, and tested the enrichment of secondary drivers in Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways that also contained the initiating mutations. We searched for additional mutations in the putative secondary driver gene protein tyrosine kinase 2 beta (

resultsSecondary drivers were significantly enriched in KEGG pathways that also contained

conclusionsA considerable part of rare mutations that occur in addition to known driver mutations are likely to affect tumor development and progression.

Indexed as

driver mutationgene set enrichmentmutation signaturetumor evolution

Identifiers

PMID31671564
PMCPMC6896012
OpenAlexW2982392667

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.