Evidence map›Paper›PMID 31671093›Full record

ArticlePLoS genetics2019

A missense mutation in SNRPE linked to non-syndromal microcephaly interferes with U snRNP assembly and pre-mRNA splicing.

Tao Chen, Bin Zhang, Thomas Ziegenhals, Archana B Prusty, Sebastian Fröhler, Clemens Grimm, Yuhui Hu, Bernhard Schaefke, Liang Fang, Min Zhang and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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  3. Two High-QualityInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Tao ChenLaboratory for Functional Genomics and Systems Biology, Berlin Institute for Medical System Biology, Max-Delbrück-Center for Molecular Medicine, Berlin, Germany.
Bin ZhangDepartment of Biology, Southern University of Science and Technology (SUSTech), Shenzhen, China.ORCID 0000-0001-8835-8370
Thomas ZiegenhalsDepartment of Biochemistry, Theodor-Boveri-Institute, University of Würzburg, Würzburg, Germany.
Archana B PrustyDepartment of Biochemistry, Theodor-Boveri-Institute, University of Würzburg, Würzburg, Germany.
Sebastian FröhlerLaboratory for Functional Genomics and Systems Biology, Berlin Institute for Medical System Biology, Max-Delbrück-Center for Molecular Medicine, Berlin, Germany.
Clemens GrimmDepartment of Biochemistry, Theodor-Boveri-Institute, University of Würzburg, Würzburg, Germany.ORCID 0000-0001-9085-5130
Yuhui HuDepartment of Biology, Southern University of Science and Technology (SUSTech), Shenzhen, China.
Bernhard SchaefkeDepartment of Biology, Southern University of Science and Technology (SUSTech), Shenzhen, China.
Liang FangDepartment of Biology, Southern University of Science and Technology (SUSTech), Shenzhen, China.ORCID 0000-0003-4502-1756
Min ZhangDepartment of Biology, Southern University of Science and Technology (SUSTech), Shenzhen, China.
Nadine KraemerCharité-Universitätsmedizin Berlin, Institute of Cell Biology and Neurobiology, Berlin, Germany.ORCID 0000-0002-7002-5161
Angela M KaindlCharité-Universitätsmedizin Berlin, Institute of Cell Biology and Neurobiology, Berlin, Germany.ORCID 0000-0001-9454-206X
Utz FischerDepartment of Biochemistry, Theodor-Boveri-Institute, University of Würzburg, Würzburg, Germany.
Wei ChenDepartment of Biology, Southern University of Science and Technology (SUSTech), Shenzhen, China.
Southern University of Science and Technology · CNUniversity of Würzburg · DECharité - Universitätsmedizin Berlin · DEMax Delbrück Center · DENational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Malfunction of pre-mRNA processing factors are linked to several human diseases including cancer and neurodegeneration. Here we report the identification of a de novo heterozygous missense mutation in the SNRPE gene (c.65T>C (p.Phe22Ser)) in a patient with non-syndromal primary (congenital) microcephaly and intellectual disability. SNRPE encodes SmE, a basal component of pre-mRNA processing U snRNPs. We show that the microcephaly-linked SmE variant is unable to interact with the SMN complex and as a consequence fails to assemble into U snRNPs. This results in widespread mRNA splicing alterations in fibroblast cells derived from this patient. Similar alterations were observed in HEK293 cells upon SmE depletion that could be rescued by the expression of wild type but not mutant SmE. Importantly, the depletion of SmE in zebrafish causes aberrant mRNA splicing alterations and reduced brain size, reminiscent of the patient microcephaly phenotype. We identify the EMX2 mRNA, which encodes a protein required for proper brain development, as a major mis-spliced down stream target. Together, our study links defects in the SNRPE gene to microcephaly and suggests that alterations of cellular splicing of specific mRNAs such as EMX2 results in the neurological phenotype of the disease.

Indexed as

Alternative SplicingMutation, MissenseAnimalsCell LineDisease Models, AnimalEmpty Spiracles Homeobox ProteinsExome SequencingFemaleHEK293 CellsHomeodomain ProteinsHumansIntellectual DisabilityMicrocephalyPedigreeRibonucleoproteins, Small NuclearRNA, MessengerEmpty Spiracles Homeobox ProteinsHomeodomain ProteinsRibonucleoproteins, Small NuclearRNA, MessengersnRNP Core ProteinsSNRPE protein, humanTranscription Factors

Identifiers

PMID31671093
PMCPMC6850558
OpenAlexW2982462899

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.