Evidence map›Paper›PMID 31668010›Full record

ArticleEMBO reports2019

Optogenetic inhibition of Delta reveals digital Notch signalling output during tissue differentiation.

Ranjith Viswanathan, Aleksandar Necakov, Mateusz Trylinski, Rohit Krishnan Harish, Daniel Krueger, Emilia Esposito, Francois Schweisguth, Pierre Neveu, Stefano De Renzis

Open access · hybridAbstract read
In one paragraph

Article in EMBO reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  12. Revealing epithelial morphogenetic mechanisms through live imaging.Current opinion in genetics & development · 2022
    Review
  13. Article
  14. Article
  15. Article
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  17. Article
  18. Review
  19. Review
  20. Biophysics of Notch Signaling.Annual review of biophysics · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Ranjith ViswanathanDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Aleksandar NecakovDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Mateusz TrylinskiInstitut Pasteur, UMR3738, CNRS, Paris, France.
Rohit Krishnan HarishDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Daniel KruegerDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Emilia EspositoDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Francois SchweisguthInstitut Pasteur, UMR3738, CNRS, Paris, France.
Pierre NeveuCell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0003-4939-3418
Stefano De RenzisDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.ORCID 0000-0003-4764-2070
European Molecular Biology Laboratory · DECentre National de la Recherche Scientifique · FRBrock University · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spatio-temporal regulation of signalling pathways plays a key role in generating diverse responses during the development of multicellular organisms. The role of signal dynamics in transferring signalling information in vivo is incompletely understood. Here, we employ genome engineering in Drosophila melanogaster to generate a functional optogenetic allele of the Notch ligand Delta (opto-Delta), which replaces both copies of the endogenous wild-type locus. Using clonal analysis, we show that optogenetic activation blocks Notch activation through cis-inhibition in signal-receiving cells. Signal perturbation in combination with quantitative analysis of a live transcriptional reporter of Notch pathway activity reveals differential tissue- and cell-scale regulatory modes. While at the tissue-level the duration of Notch signalling determines the probability with which a cellular response will occur, in individual cells Notch activation acts through a switch-like mechanism. Thus, time confers regulatory properties to Notch signalling that exhibit integrative digital behaviours during tissue differentiation.

Indexed as

AnimalsAnimals, Genetically ModifiedCell DifferentiationDrosophila melanogasterDrosophila ProteinsGenes, InsectIntracellular Signaling Peptides and ProteinsMembrane ProteinsMutationOptogeneticsPhenotypeReceptors, NotchSignal TransductionSpatio-Temporal Analysisdelta proteinDrosophila ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsN protein, DrosophilaReceptors, NotchmorphogenesisNotch signallingoptogeneticssignal dynamicstissue differentiation

Identifiers

PMID31668010
PMCPMC6893285
OpenAlexW2982368384

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.