Evidence map›Paper›PMID 31666699›Full record

ArticleNature2019

Human gut bacteria contain acquired interbacterial defence systems.

Benjamin D Ross, Adrian J Verster, Matthew C Radey, Danica T Schmidtke, Christopher E Pope, Lucas R Hoffman, Adeline M Hajjar, S Brook Peterson, Elhanan Borenstein, Joseph D Mougous

Open access · greenAbstract read
In one paragraph

Article in Nature, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 160 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Oral Actinobacteria sense and defend against parasitic epibionts.bioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Antagonism by the type VI secretion system ofProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  11. Review
  12. An electron transport complex required in the gut sensitizesProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Review
  14. Review
  15. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Deciphering theJournal of bacteriology · 2025
    Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Benjamin D Ross *Department of Microbiology, University of Washington, Seattle, WA, USA.
Adrian J Verster *Department of Genome Sciences, University of Washington, Seattle, WA, USA.
Matthew C RadeyDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Danica T SchmidtkeDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Christopher E PopeDepartment of Pediatrics, University of Washington, Seattle, WA, USA.
Lucas R HoffmanDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Adeline M HajjarDepartment of Comparative Medicine, University of Washington, Seattle, WA, USA.
S Brook PetersonDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Elhanan Borenstein *Department of Genome Sciences, University of Washington, Seattle, WA, USA. elbo@uw.edu.
Joseph D Mougous *Department of Microbiology, University of Washington, Seattle, WA, USA. mougous@uw.edu.
University of Washington · US

Funding

Translational Research Center to Expedite Novel Therapies in Cystic FibrosisP30DK089507 · NIDDK · SEATTLE CHILDREN'S HOSPITAL · PI PRADEEP k SINGH · 2010 to 2026
$21.4M
Type VI secretion effectors and interbacterial competition in vivoR01AI080609 · NIAID · YALE UNIVERSITY · PI MOUGOUS, JOSEPH DAVID · 2009 to 2025
$6.7M
The relationship of fecal microbiomes and nutritional status in CFR01DK095869 · NIDDK · UNIVERSITY OF WASHINGTON · PI HOFFMAN, LUCAS R, MILLER, SAMUEL I · 2014 to 2018
$3.2M
Patient-oriented microbiome and advanced culture approaches to identifying the microbial determinants of chronic pediatric diseaseK24HL141669 · NHLBI · UNIVERSITY OF WASHINGTON · PI Lucas R Hoffman · 2018 to 2026
$929k
Metabolic model-based integrative study of the relationship between the gut microbiome, metabolome, and dietR01GM124312 · NIGMS · UNIVERSITY OF WASHINGTON · PI BORENSTEIN, ELHANAN · 2017 to 2018
$593k
AN INTERBACTERIAL ADAPTIVE IMMUNE SYSTEM ENCODED BY BACTEROIDALESR00GM129874 · NIGMS · DARTMOUTH COLLEGE · PI ROSS, BENJAMIN · 2020 to 2021
$496k
An Interbacterial Adaptive Immune System Encoded by BacteroidalesK99GM129874 · NIGMS · UNIVERSITY OF WASHINGTON · PI ROSS, BENJAMIN · 2018 to 2019
$98k
Howard Hughes Medical InstituteNHLBI NIH HHS K24 HL141669NIAID NIH HHS R01 AI080609NIDDK NIH HHS P30 DK089507NIDDK NIH HHS R01 DK095869NIGMS NIH HHS K99 GM129874NIGMS NIH HHS R00 GM129874NIGMS NIH HHS R01 GM124312NIH HHS AI080609
6 · The paper itself

Abstract

The human gastrointestinal tract consists of a dense and diverse microbial community, the composition of which is intimately linked to health. Extrinsic factors such as diet and host immunity are insufficient to explain the constituents of this community, and direct interactions between co-resident microorganisms have been implicated as important drivers of microbiome composition. The genomes of bacteria derived from the gut microbiome contain several pathways that mediate contact-dependent interbacterial antagonism

Indexed as

BacteroidetesGastrointestinal MicrobiomeMicrobial InteractionsAnimalsFemaleGastrointestinal TractGenes, BacterialHumansMiceMultigene FamilyType VI Secretion SystemsType VI Secretion Systems

Identifiers

PMID31666699
PMCPMC6938237
OpenAlexW2982362728

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.