Evidence map›Paper›PMID 31665830›Full record

ArticlePediatric pulmonology2020

Identification of CFTR variants in Latino patients with cystic fibrosis from the Dominican Republic and Puerto Rico.

Andrew M Zeiger, Meghan E McGarry, Angel C Y Mak, Vivian Medina, Sandra Salazar, Celeste Eng, Amy K Liu, Sam S Oh, Thomas J Nuckton, Deepti Jain and 7 more

Abstract read
In one paragraph

Article in Pediatric pulmonology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
  2. Review
  3. Proteostasis landscapes of cystic fibrosis variants reveal drug response vulnerability.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Heliyon · 2024
    Article
  7. Article
  8. Children (Basel, Switzerland) · 2023
    Article
  9. Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Andrew M ZeigerDepartment of Medicine, University of California San Francisco, San Francisco, California.
Meghan E McGarryDepartment of Pediatrics, University of California San Francisco, San Francisco, California.ORCID 0000-0002-8562-7018
Angel C Y MakDepartment of Medicine, University of California San Francisco, San Francisco, California.
Vivian MedinaDepartment of Pediatrics, Centro de Neumología Pediátrica, San Juan, Puerto Rico.
Sandra SalazarDepartment of Medicine, University of California San Francisco, San Francisco, California.
Celeste EngDepartment of Medicine, University of California San Francisco, San Francisco, California.
Amy K LiuDepartment of Medicine, University of California San Francisco, San Francisco, California.
Sam S OhDepartment of Medicine, University of California San Francisco, San Francisco, California.
Thomas J NucktonDepartment of Medicine, University of California San Francisco, San Francisco, California.
Deepti JainDepartment of Biostatistics, University of Washington, Seattle, Washington.
Thomas W BlackwellDepartment of Biostatistics, Center for Statistical Genetics, University of Michigan, Ann Arbor, Michigan.
Hyun Min KangDepartment of Biostatistics, Center for Statistical Genetics, University of Michigan, Ann Arbor, Michigan.
Goncalo AbecasisDepartment of Biostatistics, Center for Statistical Genetics, University of Michigan, Ann Arbor, Michigan.
Leandra Cordero OñateDepartment of Pediatrics, Neumología Pediátrica del Hospital Infantil Dr. Robert Reid Cabral, Santo Domingo, República Dominicana.
Max A SeiboldDepartment of Pediatrics, National Jewish Health, Denver, Colorado.
Esteban G BurchardDepartment of Medicine, University of California San Francisco, San Francisco, California.
Jose Rodriguez-SantanaDepartment of Pediatrics, Centro de Neumología Pediátrica, San Juan, Puerto Rico.

Funding

Studies of Rare Genetic Variation in the Isolated Population of SardiniaR01HL117626 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ABECASIS, GONCALO · 2013 to 2016
$10.5M
The Airway Functional Genomics of Bronchodilator Drug Response in Minority Children with AsthmaR01HL117004 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SEIBOLD, MAX A · 2013 to 2022
$9.3M
Rare variants and NHLBI traits in deeply phenotyped cohortsR01HL120393 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M, RICE, KENNETH M. · 2014 to 2016
$8.9M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Transcriptomic and Pharmacogenetic Asthma Endotypes in Minority ChildrenR01HL135156 · NHLBI · NATIONAL JEWISH HEALTH · PI SEIBOLD, MAX A, ZIV, ELAD · 2017 to 2021
$4.1M
Genes, air pollution, and asthma severity in minority childrenR01MD010443 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEIBOLD, MAX A, ZIV, ELAD · 2016 to 2020
$3.8M
Risk Factors For Worse Lung Function In Latinos With Cystic FibrosisK23HL133437 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGARRY, MEGHAN ELIZABETH · 2018 to 2023
$1.0M
NHLBI NIH HHS 1K23HL133437-01A1NHLBI NIH HHS 1X01HL134589NHLBI NIH HHS 3R01HL-120393-02S1NHLBI NIH HHS HHSN268201800001CNHLBI NIH HHS K23 HL133437NHLBI NIH HHS R01 HL117004NHLBI NIH HHS R01HL117004NHLBI NIH HHS R01 HL117626NHLBI NIH HHS R01 HL120393NHLBI NIH HHS R01 HL135156NHLBI NIH HHS R01HL135156NIEHS NIH HHS HHSN268201600032CNIEHS NIH HHS R01 ES015794NIEHS NIH HHS R01ES015794NIMHD NIH HHS L60 MD010865NIMHD NIH HHS R01 MD010443NIMHD NIH HHS R01MD010443
6 · The paper itself

Abstract

backgroundIn cystic fibrosis (CF), the spectrum and frequency of CFTR variants differ by geography and race/ethnicity. CFTR variants in White patients are well-described compared with Latino patients. No studies of CFTR variants have been done in patients with CF in the Dominican Republic or Puerto Rico.

methodsCFTR was sequenced in 61 Dominican Republican patients and 21 Puerto Rican patients with CF and greater than ​​​​60 mmol/L sweat chloride. The spectrum of CFTR variants was identified and the proportion of patients with 0, 1, or 2 CFTR variants identified was determined. The functional effects of identified CFTR variants were investigated using clinical annotation databases and computational prediction tools.

resultsOur study found 10% of Dominican patients had two CFTR variants identified compared with 81% of Puerto Rican patients. No CFTR variants were identified in 69% of Dominican patients and 10% of Puerto Rican patients. In Dominican patients, there were 19 identified CFTR variants, accounting for 25 out of 122 disease alleles (20%). In Puerto Rican patients, there were 16 identified CFTR variants, accounting for 36 out of 42 disease alleles (86%) in Puerto Rican patients. Thirty CFTR variants were identified overall. The most frequent variants for Dominican patients were p.Phe508del and p.Ala559Thr and for Puerto Rican patients were p.Phe508del, p.Arg1066Cys, p.Arg334Trp, and p.I507del.

conclusionsIn this first description of the CFTR variants in patients with CF from the Dominican Republic and Puerto Rico, there was a low detection rate of two CFTR variants after full sequencing with the majority of patients from the Dominican Republic without identified variants.

Indexed as

AdolescentBase SequenceBlack PeopleCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorDominican RepublicFemaleHispanic or LatinoHumansMalePuerto RicoWhite PeopleCystic Fibrosis Transmembrane Conductance RegulatorCFTR variantshealth disparitiesLatinowhole genome sequencing

Identifiers

PMID31665830
PMCPMC7571374

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.