Evidence map›Paper›PMID 31665812›Full record

ArticleThe New phytologist2020

Ribosome assembly factor Adenylate Kinase 6 maintains cell proliferation and cell size homeostasis during root growth.

Radka Slovak, Claudia Setzer, Mykola Roiuk, Jonas Bertels, Christian Göschl, Katharina Jandrasits, Gerrit T S Beemster, Wolfgang Busch

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Life-history trade-offs explain local adaptation inbioRxiv : the preprint server for biology · 2025
    Article
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  4. Article
  5. Article
  6. Article
  7. An allelic variant in the ACS7 gene promotes primary root growth in watermelon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Magnesium Signaling in Plants.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 4 countries.

Radka SlovakGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030, Vienna, Austria.ORCID 0000-0002-9963-5975
Claudia SetzerGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030, Vienna, Austria.
Mykola RoiukMax F. Perutz Laboratories (MFPL), Vienna Biocenter (VBC), Dr Bohr-Gasse 9, 1030, Vienna, Austria.ORCID 0000-0001-5225-4422
Jonas BertelsLaboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerpen, Belgium.ORCID 0000-0002-6377-5781
Christian GöschlGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030, Vienna, Austria.
Katharina JandrasitsGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030, Vienna, Austria.
Gerrit T S BeemsterLaboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerpen, Belgium.ORCID 0000-0001-6014-053X
Wolfgang BuschGregor Mendel Institute (GMI), Austrian Academy of Sciences, Vienna Biocenter (VBC), Dr Bohr-Gasse 3, 1030, Vienna, Austria.ORCID 0000-0003-2042-7290
Gregor Mendel Institute of Molecular Plant Biology · ATUniversity of Antwerp · BEMax Perutz Labs · ATSalk Institute for Biological Studies · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

From the cellular perspective, organ growth is determined by production and growth of cells. Uncovering how these two processes are coordinated is essential for understanding organogenesis and regulation of organ growth. We utilized phenotypic and genetic variation of 252 natural accessions of Arabidopsis thaliana to conduct genome-wide association studies (GWAS) for identifying genes underlying root growth variation; using a T-DNA line candidate approach, we identified one gene involved in root growth control and characterized its function using microscopy, root growth kinematics, G2/M phase cell count, ploidy levels and ribosome polysome profiles. We identified a factor contributing to root growth control: Arabidopsis Adenylate Kinase 6 (AAK6). AAK6 is required for normal cell production and normal cell elongation, and its natural genetic variation is involved in determining root growth differences between Arabidopsis accessions. A lack of AAK6 reduces cell production in the aak6 root apex, but this is partially compensated for by longer mature root cells. Thereby, aak6 mutants exhibit compensatory cell enlargement, a phenomenon unexpected in roots. Moreover, aak6 plants accumulate 80S ribosomes while the polysome profile remains unchanged, consistent with a phenotype of perturbed ribosome biogenesis. In conclusion, AAK6 impacts ribosome abundance, cell production and thereby root growth.

Indexed as

Adenylate KinaseArabidopsis ProteinsCell ProliferationCell SizeGene Expression Regulation, PlantGenome-Wide Association StudyHomeostasisPlant RootsRibosomesAdenylate Kinaseadenylate kinase 6, ArabidopsisArabidopsis ProteinsArabidopsis thalianacell elongationcell proliferationnatural variationribosome biogenesisroot growth and development

Identifiers

PMID31665812
PMCPMC7028144
OpenAlexW2982709547

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.