Evidence map›Paper›PMID 31665072›Full record

ArticleClinical epigenetics2019

Smoking index, lifestyle factors, and genomic instability assessed by single-cell gel electrophoresis: a cross-sectional study in subjects from Yucatan, Mexico.

Alejandra Locken-Castilla, Elda Leonor Pacheco-Pantoja, Fátima Rodríguez-Brito, Sherlin May-Kim, Victor López-Rivas, Angel Ceballos-Cruz

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Alejandra Locken-CastillaMedicine School, Health Sciences Division, Universidad Anáhuac Mayab, Km 15.5 Carr. Mérida-Progreso, Mérida, Yucatán, México.
Elda Leonor Pacheco-PantojaMedicine School, Health Sciences Division, Universidad Anáhuac Mayab, Km 15.5 Carr. Mérida-Progreso, Mérida, Yucatán, México. elda.pacheco@anahuac.mx.ORCID 0000-0003-4327-2826
Fátima Rodríguez-BritoHealth Sciences Division, Universidad Anáhuac Mayab, Km 15.5 Carr. Mérida-Progreso, Mérida, Yucatán, México.
Sherlin May-KimHealth Sciences Division, Universidad Anáhuac Mayab, Km 15.5 Carr. Mérida-Progreso, Mérida, Yucatán, México.
Victor López-RivasHealth Sciences Division, Universidad Anáhuac Mayab, Km 15.5 Carr. Mérida-Progreso, Mérida, Yucatán, México.
Angel Ceballos-CruzHealth Sciences Division, Universidad Anáhuac Mayab, Km 15.5 Carr. Mérida-Progreso, Mérida, Yucatán, México.
Anahuac Mayab University · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIt is widely accepted that genomic instability is associated with several mechanisms involving oxidative stress, which can increase the rate of DNA breaks. Such factors include smoking, impairments in body composition, an unhealthy lifestyle, and a hereditary history of cancer. The aim was to evaluate the degree of association of genomic instability in smokers and non-smokers, and how the risk could change depending on the lifestyle and other causes. For this purpose, a survey of tobacco consumption, dietary patterns, physical activity, antecedents of cancer, and body composition assessment was carried out. Genomic instability was evaluated through a single-cell gel electrophoresis using peripheral blood mononuclear cells in three different conditions of oxidative stress. The analysis of genomic damage degree was performed through a dimension reduction procedure (principal component analysis) from 16 parameters per treatment (adding up 48 parameters of genomic damage per subject) and a binary logistic regression model for DNA fragmentation risk.

resultsThe sample consisted of 82 participants, divided into three age groups: young adults (18-35 years), adults (36-59 years), and older adults (60-95 years). As expected, the results showed a significant positive correlation of age with genomic damage rates, represented by 2 PCA groups (p = 0.027, p = 0.004). There were consistent significant positive associations of genomic damage rates with smoking index and three PCA groups (p = 0.007, p = 0.004, p = 0.009). The smoking status and age group analysis revealed that there were significant differences for adult smokers with the same aforementioned PCA groups (p = 0.002, p = 0.001, p = 0.010). In addition, higher DNA damage rates were found in subjects with incorrect diet patterns, long sitting hours, and previous exposure to radiation. The analysis with binary logistic regression displayed two models in which lifestyles (age, diet, and/or sedentarism) did not change the significance of smoking index for DNA fragmentation risk; however, when physical activity was present in the model, the smoking index was not a significant factor for DNA damage risk.

conclusionsAlthough it is well known that smoking affects human health in different ways, DNA fragmentation can be analyzed by a damage phenotypic analysis and integrate a risk analysis reshaped by diet and lifestyle in general.

Indexed as

DNA MethylationGenomic InstabilityAdultAgedAged, 80 and overAge DistributionCross-Sectional StudiesHumansLife StyleLogistic ModelsMaleMexicoMiddle AgedSequence Analysis, DNASingle-Cell AnalysisSmoking

Identifiers

PMID31665072
PMCPMC6819384
OpenAlexW2982490621

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.