Evidence map›Paper›PMID 31664505›Full record

ArticleActa neuropathologica2020

NF1 patient missense variants predict a role for ATM in modifying neurofibroma initiation.

Yanan Yu, Kwangmin Choi, Jianqiang Wu, Paul R Andreassen, Phillip J Dexheimer, Mehdi Keddache, Hilde Brems, Robert J Spinner, Jose A Cancelas, Lisa J Martin and 4 more

Open access · greenAbstract read
In one paragraph

Article in Acta neuropathologica, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  3. Review
  4. Review
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  9. Co-occurrence of mutations inFrontiers in endocrinology · 2022
    Article
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  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Yanan YuDepartment of Experimental Hematology and Cancer Biology, Cincinati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinanti School of Medicine, Cincinnati, OH, USA.
Kwangmin ChoiDepartment of Experimental Hematology and Cancer Biology, Cincinati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinanti School of Medicine, Cincinnati, OH, USA.
Jianqiang WuDepartment of Experimental Hematology and Cancer Biology, Cincinati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinanti School of Medicine, Cincinnati, OH, USA.
Paul R AndreassenDepartment of Experimental Hematology and Cancer Biology, Cincinati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinanti School of Medicine, Cincinnati, OH, USA.
Phillip J DexheimerDivision of Biomedical Informatics, Cincinnati Children's Hospital, Cincinnati, OH, USA.
Mehdi KeddacheDivision of Human Genetics, Cincinnati Children's Hospital Medical Center and the Department of Pediatrics, University of Cincinnati School of Medicine, Cincinnati, OH, USA.
Hilde BremsDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Robert J SpinnerDepartment of Neurological Surgery, Mayo Clinic, Rochester, MN, USA.
Jose A CancelasDepartment of Experimental Hematology and Cancer Biology, Cincinati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinanti School of Medicine, Cincinnati, OH, USA.
Lisa J MartinDivision of Human Genetics, Cincinnati Children's Hospital Medical Center and the Department of Pediatrics, University of Cincinnati School of Medicine, Cincinnati, OH, USA.
Margaret R WallaceDepartment of Molecular Genetics and Microbiology, UF Genetics Institute, UF Health Cancer Center, University of Florida, Gainesville, FL, USA.
Eric LegiusDepartment of Human Genetics, KU Leuven, Leuven, Belgium.
Kristine S VogelDepartment of Cell Systems and Anatomy, UT Health San Antonio, San Antonio, TX, USA.
Nancy RatnerDepartment of Experimental Hematology and Cancer Biology, Cincinati Children's Hospital Medical Center and Department of Pediatrics, University of Cincinanti School of Medicine, Cincinnati, OH, USA. Nancy.Ratner@cchmc.org.ORCID 0000-0002-1450-9225
Cincinnati Children's Hospital Medical Center · USKU Leuven · BEMayo Clinic · USThe University of Texas Health Science Center at San Antonio · USUniversity of Florida Health · US

Funding

MiR-155 and RUNX function in neurofibroma tumorigenesis and therapyR01NS097233 · NINDS · CINCINNATI CHILDRENS HOSP MED CTR · PI Jianqiang Wu · 2016 to 2026
$3.8M
Ras Proteins in Nerve TumorigensisR37NS083580 · NINDS · CINCINNATI CHILDRENS HOSP MED CTR · PI RATNER, NANCY · 2014 to 2020
$2.7M
NINDS NIH HHS R01 NS097233NINDS NIH HHS R37 NS083580
6 · The paper itself

Abstract

In Neurofibromatosis type 1, NF1 gene mutations in Schwann cells (SC) drive benign plexiform neurofibroma (PNF), and no additional SC changes explain patient-to-patient variability in tumor number. Evidence from twin studies suggests that variable expressivity might be caused by unidentified modifier genes. Whole exome sequencing of SC and fibroblast DNA from the same resected PNFs confirmed biallelic SC NF1 mutations; non-NF1 somatic SC variants were variable and present at low read number. We identified frequent germline variants as possible neurofibroma modifier genes. Genes harboring variants were validated in two additional cohorts of NF1 patients and by variant burden test. Genes including CUBN, CELSR2, COL14A1, ATR and ATM also showed decreased gene expression in some neurofibromas. ATM-relevant DNA repair defects were also present in a subset of neurofibromas with ATM variants, and in some neurofibroma SC. Heterozygous ATM G2023R or homozygous S707P variants reduced ATM protein expression in heterologous cells. In mice, genetic Atm heterozygosity promoted Schwann cell precursor self-renewal and increased tumor formation in vivo, suggesting that ATM variants contribute to neurofibroma initiation. We identify germline variants, rare in the general population, overrepresented in NF1 patients with neurofibromas. ATM and other identified genes are candidate modifiers of PNF pathogenesis.

Indexed as

Genes, Neurofibromatosis 1AnimalsAtaxia Telangiectasia Mutated ProteinsExome SequencingFibroblastsHumansMiceMutation, MissenseNeurofibroma, PlexiformNeurofibromatosis 1Schwann CellsAtaxia Telangiectasia Mutated ProteinsATMDNA damageGenomicsModifier genesMutationNeurofibromaNeurofibromatosis type 1

Identifiers

PMID31664505
PMCPMC7243727
OpenAlexW2982290948

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.