Evidence map›Paper›PMID 31664492›Full record

ArticleArchives of microbiology2020

Microaerobic conditions caused the overwhelming dominance of Acinetobacter spp. and the marginalization of Rhodococcus spp. in diesel fuel/crude oil mixture-amended enrichment cultures.

Fruzsina Révész, Perla Abigail Figueroa-Gonzalez, Alexander J Probst, Balázs Kriszt, Sinchan Banerjee, Sándor Szoboszlay, Gergely Maróti, András Táncsics

Abstract read
In one paragraph

Article in Archives of microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Fruzsina RévészRegional University Center of Excellence in Environmental Industry, Szent István University, Páter K. u. 1., Gödöllő, 2100, Hungary.
Perla Abigail Figueroa-GonzalezBiofilm Centre, University of Duisburg-Essen, 45141, Essen, Germany.
Alexander J ProbstBiofilm Centre, University of Duisburg-Essen, 45141, Essen, Germany.
Balázs KrisztRegional University Center of Excellence in Environmental Industry, Szent István University, Páter K. u. 1., Gödöllő, 2100, Hungary.
Sinchan BanerjeeRegional University Center of Excellence in Environmental Industry, Szent István University, Páter K. u. 1., Gödöllő, 2100, Hungary.
Sándor SzoboszlayDepartment of Environmental Safety and Ecotoxicology, Szent István University, Gödöllő, Hungary.
Gergely MarótiInstitute of Plant Biology, Biological, Research Centre of the Hungarian Academy of Sciences, Szeged, Hungary.
András TáncsicsRegional University Center of Excellence in Environmental Industry, Szent István University, Páter K. u. 1., Gödöllő, 2100, Hungary. tancsics.andras@fh.szie.hu.ORCID http://orcid.org/0000-0002-0927-1136

Funding

Ministerium für Kultur und Wissenschaft des Landes Nordrhein-Westfahlen Nachwuchsgruppe Dr. Alexander ProbstMinistry for Innovation and Technology (HU) TUDFO/47138/2019-ITMMinistry of Human Capacities (HU) UNKP-18-3 New National Excellence Program
6 · The paper itself

Abstract

The aim of the present study was to reveal how different microbial communities evolve in diesel fuel/crude oil-contaminated environments under aerobic and microaerobic conditions. To investigate this question, aerobic and microaerobic bacterial enrichments amended with a diesel fuel/crude oil mixture were established and analysed. The representative aerobic enrichment community was dominated by Gammaproteobacteria (64.5%) with high an abundance of Betaproteobacteriales (36.5%), followed by Alphaproteobacteria (8.7%), Actinobacteria (5.6%), and Candidatus Saccharibacteria (4.5%). The most abundant alkane monooxygenase (alkB) genotypes in this enrichment could be linked to members of the genus Rhodococcus and to a novel Gammaproteobacterium, for which we generated a high-quality draft genome using genome-resolved metagenomics of the enrichment culture. Contrarily, in the microaerobic enrichment, Gammaproteobacteria (99%) overwhelmingly dominated the microbial community with a high abundance of the genera Acinetobacter (66.3%), Pseudomonas (11%) and Acidovorax (11%). Under microaerobic conditions, the vast majority of alkB gene sequences could be linked to Pseudomonas veronii. Consequently, results shed light on the fact that the excellent aliphatic hydrocarbon degrading Rhodococcus species favour clear aerobic conditions, while oxygen-limited conditions can facilitate the high abundance of Acinetobacter species in aliphatic hydrocarbon-contaminated subsurface environments.

Indexed as

Biodegradation, EnvironmentalAcinetobacterActinobacteriaCytochrome P-450 CYP4AGasolineGenotypeHydrocarbonsProteobacteriaPseudomonasRhodococcusCytochrome P-450 CYP4AGasolineHydrocarbonsAcinetobacterAlkane-monooxygenasealkBBiodegradationCandidatus saccharibacteriaGenome-resolved metagenomicsGroundwaterPetroleum hydrocarbonsRhodococcus

Identifiers

PMID31664492
PMCPMC7012980

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.