Evidence map›Paper›PMID 31664159›Full record

ArticleThe ISME journal2020

Seasonality of interactions between a plant virus and its host during persistent infection in a natural environment.

Mie N Honjo, Naoko Emura, Tetsuhiro Kawagoe, Jiro Sugisaka, Mari Kamitani, Atsushi J Nagano, Hiroshi Kudoh

Open access · hybridAbstract read
In one paragraph

Article in The ISME journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 79 citations in OpenAlex.

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  19. Investigating Grapevine Red Blotch Virus Infection inInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Mie N HonjoCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan. mhonjo@ecology.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0001-7613-293X
Naoko EmuraCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan.
Tetsuhiro KawagoeCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan.
Jiro SugisakaCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan.
Mari KamitaniCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan.
Atsushi J NaganoCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan.ORCID http://orcid.org/0000-0001-7891-5049
Hiroshi KudohCenter for Ecological Research, Kyoto University, Otsu, 520-2113, Japan. kudoh@ecology.kyoto-u.ac.jp.ORCID http://orcid.org/0000-0001-9777-4886
Kyoto University · JPRyukoku University · JPKagoshima University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Persistent infection, wherein a pathogen is continually present in a host individual, is widespread in virus-host systems. However, little is known regarding how seasonal environments alter virus-host interaction during such metastability. We observed a lineage-to-lineage infection of the host plant Arabidopsis halleri with Turnip mosaic virus for 3 years without severe damage. Virus dynamics and virus-host interactions within hosts were highly season dependent. Virus accumulation in the newly formed leaves was temperature dependent and was suppressed during winter. Transcriptome analyses suggested that distinct defence mechanisms, i.e. salicylic acid (SA)-dependent resistance and RNA silencing, were predominant during spring and autumn, respectively. Transcriptomic difference between infected and uninfected plants other than defence genes appeared transiently only during autumn in upper leaves. However, the virus preserved in the lower leaves is transferred to the clonal offspring of the host plants during spring. In the linage-to-linage infection of the A. halleri-TuMV system, both host clonal reproduction and virus transmission into new clonal rosettes are secured during the winter-spring transition. How virus and host overwinter turned out to be critical for understanding a long-term virus-host interaction within hosts under temperate climates, and more generally, understanding seasonality provides new insight into ecology of plant viruses.

Indexed as

ArabidopsisSeasonsGene ExpressionHost-Pathogen InteractionsPlant DiseasesPlant VirusesPotyvirusVirus Diseases

Identifiers

PMID31664159
PMCPMC6976672
OpenAlexW2982631269

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.