Evidence map›Paper›PMID 31659801›Full record

ArticleThe Plant journal : for cell and molecular biology2020

Inhibition of Arabidopsis thaliana CIN-like TCP transcription factors by Agrobacterium T-DNA-encoded 6B proteins.

Thomas Potuschak, Javier Palatnik, Carla Schommer, Nicolas Sierro, Nikolai V Ivanov, Yerim Kwon, Pascal Genschik, Jean-Michel Davière, Léon Otten

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Conservation of anFrontiers in plant science · 2022
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Thomas PotuschakInstitut de Biologie Moléculaire des Plantes (IBMP), Rue du Général Zimmer 12, 67084, Strasbourg, France.
Javier PalatnikIBR-CONICET, Predio CCT, Ocampo y Esmeralda s/n, 2000, Rosario, Argentina.
Carla SchommerIBR-CONICET, Predio CCT, Ocampo y Esmeralda s/n, 2000, Rosario, Argentina.
Nicolas SierroPMI R&D, Philip Morris Products S. A., Quai Jeanrenaud 5, 2000, Neuchâtel, Switzerland.
Nikolai V IvanovPMI R&D, Philip Morris Products S. A., Quai Jeanrenaud 5, 2000, Neuchâtel, Switzerland.
Yerim KwonInstitut de Biologie Moléculaire des Plantes (IBMP), Rue du Général Zimmer 12, 67084, Strasbourg, France.
Pascal GenschikInstitut de Biologie Moléculaire des Plantes (IBMP), Rue du Général Zimmer 12, 67084, Strasbourg, France.
Jean-Michel DavièreInstitut de Biologie Moléculaire des Plantes (IBMP), Rue du Général Zimmer 12, 67084, Strasbourg, France.
Léon OttenInstitut de Biologie Moléculaire des Plantes (IBMP), Rue du Général Zimmer 12, 67084, Strasbourg, France.ORCID 0000-0003-1122-7684
Institut de Biologie Moléculaire des Plantes · FRConsejo Nacional de Investigaciones Científicas y Técnicas · ARPhilip Morris International (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agrobacterium T-DNA-encoded 6B proteins cause remarkable growth effects in plants. Nicotiana otophora carries two cellular T-DNAs with three slightly divergent 6b genes (TE-1-6b-L, TE-1-6b-R and TE-2-6b) originating from a natural transformation event. In Arabidopsis thaliana, expression of 2×35S:TE-2-6b, but not 2×35S:TE-1-6b-L or 2×35S:TE-1-6b-R, led to plants with crinkly leaves, which strongly resembled mutants of the miR319a/TCP module. This module is composed of MIR319A and five CIN-like TCP (TEOSINTHE BRANCHED1, CYCLOIDEA and PROLIFERATING CELL NUCLEAR ANTIGEN BINDING FACTOR) genes (TCP2, TCP3, TCP4, TCP10 and TCP24) targeted by miR319a. The CIN-like TCP genes encode transcription factors and are required for cell division arrest at leaf margins during development. MIR319A overexpression causes excessive growth and crinkly leaves. TE-2-6b plants did not show increased miR319a levels, but the mRNA levels of the TCP4 target gene LOX2 were decreased, as in jaw-D plants. Co-expression of green fluorescent protein (GFP)-tagged TCPs with native or red fluorescent protein (RFP)-tagged TE-6B proteins led to an increase in TCP protein levels and formation of numerous cytoplasmic dots containing 6B and TCP proteins. Yeast double-hybrid experiments confirmed 6B/TCP binding and showed that TE-1-6B-L and TE-1-6B-R bind a smaller set of TCP proteins than TE-2-6B. A single nucleotide mutation in TE-1-6B-R enlarged its TCP-binding repertoire to that of TE-2-6B and caused a crinkly phenotype in Arabidopsis. Deletion analysis showed that TE-2-6B targets the TCP4 DNA-binding domain and directly interferes with transcriptional activation. Taken together, these results provide detailed insights into the mechanism of action of the N. otophora TE-encoded 6b genes.

Indexed as

AgrobacteriumArabidopsisArabidopsis ProteinsBacterial ProteinsDNA, BacterialGene Expression ProfilingMicroscopy, ConfocalNicotianaPlant DiseasesPlant LeavesPolymerase Chain ReactionTranscription FactorsTwo-Hybrid System TechniquesArabidopsis ProteinsBacterial ProteinsDNA, BacterialT-DNATranscription Factors6b oncogenejaw-D phenotypenatural transformantNicotiana otophoraTCP genes

Identifiers

PMID31659801
PMCPMC7187390
OpenAlexW2982431355

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.