Evidence map›Paper›PMID 31659337›Full record

ArticleNature biotechnology2019

Broad-spectrum resistance to bacterial blight in rice using genome editing.

Ricardo Oliva, Chonghui Ji, Genelou Atienza-Grande, José C Huguet-Tapia, Alvaro Perez-Quintero, Ting Li, Joon-Seob Eom, Chenhao Li, Hanna Nguyen, Bo Liu and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Nature biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 342 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
342citing papers in PubMed, 1 pooled it
103.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

342 citing papers in PubMed, 1 synthesis or guideline pooled it, 816 citations in OpenAlex.

  1. Pooled it
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  11. Mechanisms and balanced regulation of plant immunity.Nature reviews. Molecular cell biology · 2026
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282 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 9 institutions in 5 countries.

Ricardo Oliva *International Rice Research Institute, Metro Manila, Philippines. r.oliva@irri.org.ORCID http://orcid.org/0000-0001-9517-5249
Chonghui Ji *Division of Plant Sciences, Bond Life Sciences Center, University of Missouri, Columbia, MO, USA.
Genelou Atienza-Grande *International Rice Research Institute, Metro Manila, Philippines.
José C Huguet-Tapia *Department of Plant Pathology, University of Florida, Gainesville, FL, USA.
Alvaro Perez-Quintero *IRD, CIRAD, Université Montpellier, IPME, Montpellier, France.ORCID http://orcid.org/0000-0003-3530-8251
Ting LiDepartment of Genetics, Development and Cell Biology, Iowa State University, Ames, IA, USA.ORCID http://orcid.org/0000-0001-8273-5593
Joon-Seob EomInstitute for Molecular Physiology and Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine Universität Düsseldorf and Max Planck Institute for Plant Breeding Research, Köln, Germany.
Chenhao LiDivision of Plant Sciences, Bond Life Sciences Center, University of Missouri, Columbia, MO, USA.
Hanna NguyenInternational Rice Research Institute, Metro Manila, Philippines.ORCID http://orcid.org/0000-0002-1654-4921
Bo LiuDivision of Plant Sciences, Bond Life Sciences Center, University of Missouri, Columbia, MO, USA.
Florence AuguyIRD, CIRAD, Université Montpellier, IPME, Montpellier, France.
Coline SciallanoIRD, CIRAD, Université Montpellier, IPME, Montpellier, France.
Van T LuuInstitute for Molecular Physiology and Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine Universität Düsseldorf and Max Planck Institute for Plant Breeding Research, Köln, Germany.
Gerbert S DossaErfurt University of Applied Sciences, Erfurt, Germany.
Sébastien CunnacIRD, CIRAD, Université Montpellier, IPME, Montpellier, France.
Sarah M SchmidtInstitute for Molecular Physiology and Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine Universität Düsseldorf and Max Planck Institute for Plant Breeding Research, Köln, Germany.
Inez H Slamet-LoedinInternational Rice Research Institute, Metro Manila, Philippines.
Casiana Vera CruzInternational Rice Research Institute, Metro Manila, Philippines.
Boris SzurekIRD, CIRAD, Université Montpellier, IPME, Montpellier, France.
Wolf B FrommerInstitute for Molecular Physiology and Cluster of Excellence on Plant Sciences (CEPLAS), Heinrich Heine Universität Düsseldorf and Max Planck Institute for Plant Breeding Research, Köln, Germany. frommew@hhu.de.ORCID http://orcid.org/0000-0001-6465-0115
Frank F WhiteDepartment of Plant Pathology, University of Florida, Gainesville, FL, USA.ORCID http://orcid.org/0000-0002-9905-2454
Bing YangDivision of Plant Sciences, Bond Life Sciences Center, University of Missouri, Columbia, MO, USA. yangbi@missouri.edu.ORCID http://orcid.org/0000-0002-2293-3384
Centre de Coopération Internationale en Recherche Agronomique pour le Développement · FRCluster of Excellence on Plant Sciences · DEInternational Rice Research Institute · PHUniversity of Missouri · USUniversity of Florida · USDonald Danforth Plant Science Center · USIowa State University · USUniversity of Applied Sciences Erfurt · DEUniversity of the Philippines Los Baños · PH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial blight of rice is an important disease in Asia and Africa. The pathogen, Xanthomonas oryzae pv. oryzae (Xoo), secretes one or more of six known transcription-activator-like effectors (TALes) that bind specific promoter sequences and induce, at minimum, one of the three host sucrose transporter genes SWEET11, SWEET13 and SWEET14, the expression of which is required for disease susceptibility. We used CRISPR-Cas9-mediated genome editing to introduce mutations in all three SWEET gene promoters. Editing was further informed by sequence analyses of TALe genes in 63 Xoo strains, which revealed multiple TALe variants for SWEET13 alleles. Mutations were also created in SWEET14, which is also targeted by two TALes from an African Xoo lineage. A total of five promoter mutations were simultaneously introduced into the rice line Kitaake and the elite mega varieties IR64 and Ciherang-Sub1. Paddy trials showed that genome-edited SWEET promoters endow rice lines with robust, broad-spectrum resistance.

Indexed as

Disease ResistanceBacterial ProteinsCRISPR-Cas SystemsGene EditingGene Expression Regulation, PlantMembrane Transport ProteinsMutationOryzaPlant ProteinsPromoter Regions, GeneticSequence Analysis, DNATranscription Activator-Like EffectorsXanthomonasBacterial ProteinsMembrane Transport ProteinsPlant ProteinsTranscription Activator-Like Effectors

Identifiers

PMID31659337
PMCPMC6831514
OpenAlexW2982003255

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.