Evidence map›Paper›PMID 31659179›Full record

ArticleScientific reports2019

Clonal expansion of a virulent Streptococcus suis serotype 9 lineage distinguishable from carriage subpopulations.

Niels Willemse, Kees C H van der Ark, Norbert Stockhofe-Zurwieden, Hilde Smith, Daisy I Picavet, Conny van Solt-Smits, Henk J Wisselink, Constance Schultsz, Astrid de Greeff

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Microorganisms · 2020
    Article
  11. Update onPathogens (Basel, Switzerland) · 2020
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Niels WillemseDepartment of Global Health-Amsterdam Institute for Global Health and Development, Amsterdam UMC, Paasheuvelweg 25, 1105, BP, Amsterdam, The Netherlands.
Kees C H van der ArkDepartment of Global Health-Amsterdam Institute for Global Health and Development, Amsterdam UMC, Paasheuvelweg 25, 1105, BP, Amsterdam, The Netherlands.
Norbert Stockhofe-ZurwiedenWageningen Bioveterinary Research, Wageningen University & Research, Houtribweg 39, 8221, RA, Lelystad, The Netherlands.
Hilde SmithWageningen Bioveterinary Research, Wageningen University & Research, Houtribweg 39, 8221, RA, Lelystad, The Netherlands.
Daisy I PicavetEMCA Amsterdam, Department of Medical Biology, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105, AZ, Amsterdam, The Netherlands.
Conny van Solt-SmitsWageningen Bioveterinary Research, Wageningen University & Research, Houtribweg 39, 8221, RA, Lelystad, The Netherlands.
Henk J WisselinkWageningen Bioveterinary Research, Wageningen University & Research, Houtribweg 39, 8221, RA, Lelystad, The Netherlands.
Constance SchultszDepartment of Global Health-Amsterdam Institute for Global Health and Development, Amsterdam UMC, Paasheuvelweg 25, 1105, BP, Amsterdam, The Netherlands. c.schultsz@aighd.org.
Astrid de GreeffWageningen Bioveterinary Research, Wageningen University & Research, Houtribweg 39, 8221, RA, Lelystad, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcus suis is a porcine pathogen, causing severe invasive infections. S. suis serotype 9 is increasingly causing disease in Dutch and Chinese pig herds, but it is unknown whether all serotype 9 isolates are equally virulent and markers that can identify virulent strains are not available. Therefore, discrimination between virulent isolates and carriage isolates typically not associated with disease, is currently not possible. We collected tonsillar S. suis isolates from 6 herds not previously diagnosed with S. suis infections, and clinical S. suis isolates of previously diseased pigs. We confirmed the virulence of a virulent type strain and one representative clinical isolate, and the lack of virulence of two carriage isolates, in a pig infection model. Phylogenetic analysis of whole genome sequences of 124 isolates resulted in 10 groups, of which two were almost uniquely populated by clinical isolates. The population structure of S. suis serotype 9 appears highly diverse. However, analysis of the capsule loci sequences showed variation in a single region which fully correlated with a virulent genotype. Transmission electron microscopy suggested differences in capsule thickness between carriage and clinical genotypes. In conclusion, we found that that the S. suis serotype 9 population in the Netherlands is diverse. A distinct virulence-associated lineage was identified and could be discriminated based on the capsule locus sequence. Whilst the difference in virulence cannot be directly attributed to the DNA sequence, the correlation of capsule locus sequence with virulence could be used in the development of diagnostic tests to identify potential virulent S. suis serotype 9 in pigs.

Indexed as

PhylogenySerogroupStreptococcal InfectionsStreptococcus suisSwine DiseasesAnimalsDNA, BacterialHumansSwineDNA, Bacterial

Identifiers

PMID31659179
PMCPMC6817849

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.