Evidence map›Paper›PMID 31659163›Full record

ArticleNature communications2019

Aspartate/asparagine-β-hydroxylase crystal structures reveal an unexpected epidermal growth factor-like domain substrate disulfide pattern.

Inga Pfeffer, Lennart Brewitz, Tobias Krojer, Sacha A Jensen, Grazyna T Kochan, Nadia J Kershaw, Kirsty S Hewitson, Luke A McNeill, Holger Kramer, Martin Münzel and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  8. Structure-guided optimisation ofChemical science · 2023
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  12. Article
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  14. Exploring links between 2-oxoglutarate-dependent oxygenases and Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2022
    Review
  15. Article
  16. Article
  17. Human Oxygenase Variants Employing a Single Protein FeAngewandte Chemie (International ed. in English) · 2021
    Article
  18. Human Oxygenase Variants Employing a Single Protein FeAngewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2021
    Article
  19. Article
  20. Current Views on the Roles ofBiomolecules · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Inga PfefferChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.
Lennart BrewitzChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.
Tobias KrojerStructural Genomics Consortium, University of Oxford, Old Road Campus, Roosevelt Drive, Headington, OX3 7DQ, UK.ORCID http://orcid.org/0000-0003-0661-0814
Sacha A JensenDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.ORCID http://orcid.org/0000-0002-0560-9531
Grazyna T KochanStructural Genomics Consortium, University of Oxford, Old Road Campus, Roosevelt Drive, Headington, OX3 7DQ, UK.
Nadia J KershawChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.ORCID http://orcid.org/0000-0002-3554-2622
Kirsty S HewitsonChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.
Luke A McNeillChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.
Holger KramerDepartment of Physiology, Anatomy and Genetics, University of Oxford, South Parks Road, Oxford, OX1 3QX, UK.
Martin MünzelChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.
Richard J HopkinsonChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.ORCID http://orcid.org/0000-0001-7610-8163
Udo OppermannStructural Genomics Consortium, University of Oxford, Old Road Campus, Roosevelt Drive, Headington, OX3 7DQ, UK.ORCID http://orcid.org/0000-0001-9984-5342
Penny A HandfordDepartment of Biochemistry, University of Oxford, South Parks Road, Oxford, OX1 3QU, UK.
Michael A McDonoughChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK.ORCID http://orcid.org/0000-0003-4664-6942
Christopher J SchofieldChemistry Research Laboratory, University of Oxford, Mansfield Road, Oxford, OX1 3TA, UK. christopher.schofield@chem.ox.ac.uk.ORCID http://orcid.org/0000-0002-0290-6565
University of Oxford · GBMansfield University · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

AspH is an endoplasmic reticulum (ER) membrane-anchored 2-oxoglutarate oxygenase whose C-terminal oxygenase and tetratricopeptide repeat (TPR) domains present in the ER lumen. AspH catalyses hydroxylation of asparaginyl- and aspartyl-residues in epidermal growth factor-like domains (EGFDs). Here we report crystal structures of human AspH, with and without substrate, that reveal substantial conformational changes of the oxygenase and TPR domains during substrate binding. Fe(II)-binding by AspH is unusual, employing only two Fe(II)-binding ligands (His679/His725). Most EGFD structures adopt an established fold with a conserved Cys1-3, 2-4, 5-6 disulfide bonding pattern; an unexpected Cys3-4 disulfide bonding pattern is observed in AspH-EGFD substrate complexes, the catalytic relevance of which is supported by studies involving stable cyclic peptide substrate analogues and by effects of Ca(II) ions on activity. The results have implications for EGFD disulfide pattern processing in the ER and will enable medicinal chemistry efforts targeting human 2OG oxygenases.

Indexed as

Amino Acid SequenceAsparagineCalcium-Binding ProteinsCatalytic DomainCrystallographyDisulfidesEpidermal Growth FactorFerrous CompoundsHumansMembrane ProteinsMixed Function OxygenasesMuscle ProteinsProtein ConformationAsparagineASPH protein, humanCalcium-Binding ProteinsDisulfidesEpidermal Growth FactorFerrous CompoundsMembrane ProteinsMixed Function OxygenasesMuscle Proteins

Identifiers

PMID31659163
PMCPMC6817910
OpenAlexW2981396334

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.