Evidence map›Paper›PMID 31659118›Full record

ArticleThe Journal of biological chemistry2019

Promoter demethylation of the asparagine synthetase gene is required for ATF4-dependent adaptation to asparagine depletion.

Jie Jiang, Sankalp Srivastava, Gretchen Seim, Natalya N Pavlova, Bryan King, Lihua Zou, Chi Zhang, Minghua Zhong, Hui Feng, Reuben Kapur and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 73 citations in OpenAlex.

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  8. Metabolism of asparagine in the physiological state and cancer.Cell communication and signaling : CCS · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Jie JiangHerman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Sankalp SrivastavaHerman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Gretchen SeimMorgridge Institute for Research and Department of Nutritional Sciences, University of Wisconsin, Madison, Wisconsin 53715.
Natalya N PavlovaDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, New York 10065.
Bryan KingDepartment of Cancer Biology and Genetics, Memorial Sloan Kettering Cancer Center, New York, New York 10065.
Lihua ZouDepartment of Biochemistry and Molecular Genetics, Northwestern University, Chicago, Illinois 60611.
Chi ZhangDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Minghua ZhongHerman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Hui FengDepartment of Pharmacology, Boston University School of Medicine, Boston, Massachusetts 02118.
Reuben KapurHerman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Ronald C WekDepartment of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana 46202.
Jing FanMorgridge Institute for Research and Department of Nutritional Sciences, University of Wisconsin, Madison, Wisconsin 53715.
Ji ZhangHerman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, Indiana 46202. Electronic address: jzh1@iu.edu.
Indiana University School of MedicineMemorial Sloan Kettering Cancer Center · USUniversity of Wisconsin–Madison · USBoston University · USNorthwestern University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
Metabolic stress responses andeIF2 kinase GCN2R01GM049164 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WEK, RONALD C · 1998 to 2019
$6.3M
Metabolic adaptation in lymphoid malignanciesR01CA244625 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI ZHANG, JI · 2020 to 2024
$2.2M
The Role of DLST in LeukemogenesisR01CA215059 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FENG, HUI · 2018 to 2022
$2.0M
The Role of DLST in LeukemogenesisR56CA215059 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FENG, HUI · 2017 to 2017
$376k
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA215059NCI NIH HHS R01 CA244625NCI NIH HHS R56 CA215059NIGMS NIH HHS R01 GM049164
6 · The paper itself

Abstract

Tumor cells adapt to nutrient-limited environments by inducing gene expression that ensures adequate nutrients to sustain metabolic demands. For example, during amino acid limitations, ATF4 in the amino acid response induces expression of asparagine synthetase (ASNS), which provides for asparagine biosynthesis. Acute lymphoblastic leukemia (ALL) cells are sensitive to asparagine depletion, and administration of the asparagine depletion enzyme l-asparaginase is an important therapy option. ASNS expression can counterbalance l-asparaginase treatment by mitigating nutrient stress. Therefore, understanding the mechanisms regulating

Indexed as

Activating Transcription Factor 4AsparagineAspartate-Ammonia LigaseCCAAT-Enhancer-Binding ProteinsPromoter Regions, GeneticRNA, TransferActivating Transcription Factor 4AsparagineAspartate-Ammonia LigaseCCAAT-Enhancer-Binding ProteinsRNA, Transferacute lymphoblastic leukemiaamino acidasparagine synthetaseATF4cell metabolismCHOPchromatin modificationDNA methylationstress responsetumor metabolism

Identifiers

PMID31659118
PMCPMC6901317
OpenAlexW2982346257

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.