Evidence map›Paper›PMID 31659054›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Passive membrane transport of lignin-related compounds.

Josh V Vermaas, Richard A Dixon, Fang Chen, Shawn D Mansfield, Wout Boerjan, John Ralph, Michael F Crowley, Gregg T Beckham

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 162 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. From Defense Executor to Engineering Target: Harnessing Lignin for Crop Resistance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  7. Natural variation inScience advances · 2026
    Article
  8. Article
  9. Review
  10. Platform Potential ofJournal of agricultural and food chemistry · 2026
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. EngineeredmSphere · 2025
    Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Josh V VermaasBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401.ORCID 0000-0003-3139-6469
Richard A DixonBioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX 76203.ORCID 0000-0001-8393-9408
Fang ChenBioDiscovery Institute and Department of Biological Sciences, University of North Texas, Denton, TX 76203.
Shawn D MansfieldDepartment of Wood Science, Faculty of Forestry, University of British Columbia, Vancouver, BC, Canada V6T 1Z4.
Wout BoerjanCenter for Plant Systems Biology, VIB, 9052 Ghent, Belgium.
John RalphDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-6093-4521
Michael F CrowleyBiosciences Center, National Renewable Energy Laboratory, Golden, CO 80401; gregg.beckham@nrel.gov michael.crowley@nrel.gov.
Gregg T BeckhamNational Bioenergy Center, National Renewable Energy Laboratory, Golden, CO 80401 gregg.beckham@nrel.gov michael.crowley@nrel.gov.ORCID 0000-0002-3480-212X
National Laboratory of the Rockies · USUniversity of North Texas · USGhent University · BEUniversity of British Columbia · CAUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lignin is an abundant aromatic polymer found in plant secondary cell walls. In recent years, lignin has attracted renewed interest as a feedstock for bio-based chemicals via catalytic and biological approaches and has emerged as a target for genetic engineering to improve lignocellulose digestibility by altering its composition. In lignin biosynthesis and microbial conversion, small phenolic lignin precursors or degradation products cross membrane bilayers through an unidentified translocation mechanism prior to incorporation into lignin polymers (synthesis) or catabolism (bioconversion), with both passive and transporter-assisted mechanisms postulated. To test the passive permeation potential of these phenolics, we performed molecular dynamics simulations for 69 monomeric and dimeric lignin-related phenolics with 3 model membranes to determine the membrane partitioning and permeability coefficients for each compound. The results support an accessible passive permeation mechanism for most compounds, including monolignols, dimeric phenolics, and the flavonoid, tricin. Computed lignin partition coefficients are consistent with concentration enrichment near lipid carbonyl groups, and permeability coefficients are sufficient to keep pace with cellular metabolism. Interactions between methoxy and hydroxy groups are found to reduce membrane partitioning and improve permeability. Only carboxylate-modified or glycosylated lignin phenolics are predicted to require transporters for membrane translocation. Overall, the results suggest that most lignin-related compounds can passively traverse plant and microbial membranes on timescales commensurate with required biological activities, with any potential transport regulation mechanism in lignin synthesis, catabolism, or bioconversion requiring compound functionalization.

Indexed as

Cell MembraneDiffusionLigninMolecular Dynamics SimulationLigninbiological funnelingfree energy calculationlignin biosynthesislignin permeabilitymolecular dynamics

Identifiers

PMID31659054
PMCPMC6859372
OpenAlexW2982300690

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.