Evidence map›Paper›PMID 31658738›Full record

ArticleViruses2019

Novel Polyomaviruses in Mammals from Multiple Orders and Reassessment of Polyomavirus Evolution and Taxonomy.

Bernhard Ehlers, Augustin E Anoh, Nicole Ben Salem, Sebastian Broll, Emmanuel Couacy-Hymann, Daniela Fischer, Alma Gedvilaite, Nanina Ingenhütt, Sonja Liebmann, Maite Martin and 15 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Monitoring Campaign over an Edible Dormouse Population (Animals : an open access journal from MDPI · 2021
    Article
  17. Biology of Polyomavirus miRNA.Frontiers in microbiology · 2021
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 10 institutions in 6 countries.

Bernhard EhlersDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. ehlersb@rki.de.
Augustin E AnohLaboratoire de Zoologie-Biologie, UFR Biosciences Université Félix Houphouët Boigny, Abidjan BP V 34, Cote D'Ivoire. anohethyl@yahoo.fr.
Nicole Ben SalemDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. N.Reichert2@gmx.de.
Sebastian BrollDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. s.broll@gmx.de.
Emmanuel Couacy-HymannLaboratoire National D'appui au Développement Agricole/Laboratoire Central de Pathologie Animale, Bingerville BP 206, Cote D'Ivoire. chymann@gmail.com.
Daniela FischerDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. dan-fischer@gmx.de.
Alma GedvilaiteInstitute of Biotechnology, Vilnius University, LT-10257 Vilnius, Lithuania. agedv@ibt.lt.ORCID 0000-0003-4779-0559
Nanina IngenhüttDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. n.ingenhuett@kabelmail.de.
Sonja LiebmannDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. sonja.liebmann@online.de.
Maite MartinInstitut de Recerca i Tecnologia Agroalimentàries (IRTA), Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), 08197 Barcelona, Spain. maite.martin@irta.cat.ORCID 0000-0002-3588-2838
Arsene MossounLaboratoire de Zoologie-Biologie, UFR Biosciences Université Félix Houphouët Boigny, Abidjan BP V 34, Cote D'Ivoire. mossouna@yahoo.fr.
Lawrence MugishaEcoHealth Research Group, Conservation & Ecosystem Health Alliance (CEHA), Kampala 34153, Uganda. mugishalaw@gmail.com.ORCID 0000-0003-4932-3356
Jean-Jacques Muyembe-TamfumInstitut National de Recherche Bio-Médicale, Kinshasa-Gombe BP 1197, Congo. jjmuyembet@gmail.com.
Maude PaulyDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. paulymaude@gmx.net.
Bernat Pérez de ValInstitut de Recerca i Tecnologia Agroalimentàries (IRTA), Centre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), 08197 Barcelona, Spain. bernat.perez@irta.cat.ORCID 0000-0003-3127-9182
Hannah PreugschasDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. hannah.preugschas@gmail.com.
Dania RichterLandscape Ecology & Environmental Systems Analysis, Institute of Geoecology, Technische Universität Braunschweig, 38106 Braunschweig, Germany. dania.richter@tu-braunschweig.de.
Grit SchubertP3 "Epidemiology of highly pathogenic microorganisms", Robert Koch Institute, 13353 Berlin, Germany. schubertg@rki.de.
Claudia A SzentiksLeibniz Institute for Zoo and Wildlife Research (IZW), 10315 Berlin, Germany. szentiks@izw-berlin.de.
Tamara TeichmannDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. Tamara@uhteichmann.de.
Cornelia WalterDivision 12 "Measles, Mumps, Rubella, and Viruses Affecting Immunocompromised Patients", Robert Koch Institute, 13353 Berlin, Germany. walterc@rki.de.
Rainer G UlrichFriedrich-Loeffler-Institut, Institute of Novel and Emerging Infectious Diseases, 17493 Greifswald-Insel Riems, Germany. Rainer.Ulrich@fli.de.
Lidewij WiersmaP3 "Epidemiology of highly pathogenic microorganisms", Robert Koch Institute, 13353 Berlin, Germany. lidewij_w@hotmail.com.
Fabian H LeendertzP3 "Epidemiology of highly pathogenic microorganisms", Robert Koch Institute, 13353 Berlin, Germany. leendertzf@rki.de.
Sébastien Calvignac-SpencerP3 "Viral Evolution", Robert Koch Institute, 13353 Berlin, Germany. CalvignacS@rki.de.ORCID 0000-0003-4834-0509
Robert Koch Institute · DECentre de Recerca en Sanitat Animal · ESLaboratoire National d'Appui au Développement Agricole · CIFriedrich-Loeffler-Institut · DELeibniz Institute for Zoo and Wildlife Research · DEMakerere University · UGNational Institute of Biomedical Research · CDTechnische Universität Braunschweig · DEUniversité Alassane Ouattara · CIVilnius University · LT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As the phylogenetic organization of mammalian polyomaviruses is complex and currently incompletely resolved, we aimed at a deeper insight into their evolution by identifying polyomaviruses in host orders and families that have either rarely or not been studied. Sixteen unknown and two known polyomaviruses were identified in animals that belong to 5 orders, 16 genera, and 16 species. From 11 novel polyomaviruses, full genomes could be determined. Splice sites were predicted for large and small T antigen (LTAg, STAg) coding sequences (CDS) and examined experimentally in transfected cell culture. In addition, splice sites of seven published polyomaviruses were analyzed. Based on these data, LTAg and STAg annotations were corrected for 10/86 and 74/86 published polyomaviruses, respectively. For 25 polyomaviruses, a spliced middle T CDS was observed or predicted. Splice sites that likely indicate expression of additional, alternative T antigens, were experimentally detected for six polyomaviruses. In contrast to all other mammalian polyomaviruses, three closely related cetartiodactyl polyomaviruses display two introns within their LTAg CDS. In addition, the VP2 of Glis glis (edible dormouse) polyomavirus 1 was observed to be encoded by a spliced transcript, a unique experimental finding within the

Indexed as

PolyomavirusAnimalsAntigens, Viral, TumorBiological EvolutionClassificationGenes, ViralGenome, ViralHumansMammalsPhylogenyAntigens, Viral, TumorevolutiongenomepolyomavirussplicingT antigentaxonomyVP2

Identifiers

PMID31658738
PMCPMC6833039
OpenAlexW2979912036

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.