Evidence map›Paper›PMID 31658256›Full record

ArticlePLoS genetics2019

The quorum sensing transcription factor AphA directly regulates natural competence in Vibrio cholerae.

James R J Haycocks, Gemma Z L Warren, Lucas M Walker, Jennifer L Chlebek, Triana N Dalia, Ankur B Dalia, David C Grainger

Abstract read
In one paragraph

Article in PLoS genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. A 3'UTR-derived small RNA modulates the life cycle of the cholera toxin-encoding filamentous phage, CTXϕ.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  15. Expression of the AHPND Toxins PirAInternational journal of molecular sciences · 2022
    Article
  16. Article
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  18. Article
  19. Intraspecies heterogeneity in microbial interactions.Current opinion in microbiology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

James R J HaycocksInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.ORCID 0000-0003-3492-1257
Gemma Z L WarrenInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.ORCID 0000-0003-3464-486X
Lucas M WalkerInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Jennifer L ChlebekDepartment of Biology, Indiana University, Bloomington, IN, United States of America.ORCID 0000-0002-1744-0016
Triana N DaliaDepartment of Biology, Indiana University, Bloomington, IN, United States of America.ORCID 0000-0001-7614-1377
Ankur B DaliaDepartment of Biology, Indiana University, Bloomington, IN, United States of America.ORCID 0000-0003-2203-1230
David C GraingerInstitute of Microbiology and Infection, School of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.ORCID 0000-0003-3375-5154

Funding

Mechanisms and regulation of horizontal gene transfer by natural transformation in Vibrio choleraeR35GM128674 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI Ankur Dalia · 2018 to 2026
$3.8M
Biotechnology and Biological Sciences Research Council BB/N005961/1NIGMS NIH HHS R35 GM128674
6 · The paper itself

Abstract

Many bacteria use population density to control gene expression via quorum sensing. In Vibrio cholerae, quorum sensing coordinates virulence, biofilm formation, and DNA uptake by natural competence. The transcription factors AphA and HapR, expressed at low and high cell density respectively, play a key role. In particular, AphA triggers the entire virulence cascade upon host colonisation. In this work we have mapped genome-wide DNA binding by AphA. We show that AphA is versatile, exhibiting distinct modes of DNA binding and promoter regulation. Unexpectedly, whilst HapR is known to induce natural competence, we demonstrate that AphA also intervenes. Most notably, AphA is a direct repressor of tfoX, the master activator of competence. Hence, production of AphA markedly suppressed DNA uptake; an effect largely circumvented by ectopic expression of tfoX. Our observations suggest dual regulation of competence. At low cell density AphA is a master repressor whilst HapR activates the process at high cell density. Thus, we provide deep mechanistic insight into the role of AphA and highlight how V. cholerae utilises this regulator for diverse purposes.

Indexed as

BiofilmsCholeraDNA-Binding ProteinsGene Expression Regulation, BacterialHost-Pathogen InteractionsHumansPromoter Regions, GeneticQuorum SensingTrans-ActivatorsTranscription FactorsVibrio choleraeAphA protein, Vibrio choleraeDNA-Binding ProteinsTrans-ActivatorsTranscription Factors

Identifiers

PMID31658256
PMCPMC6855506

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.