Evidence map›Paper›PMID 31657498›Full record

ArticleChembiochem : a European journal of chemical biology2020

Isoindoline-Based Nitroxides as Bioresistant Spin Labels for Protein Labeling through Cysteines and Alkyne-Bearing Noncanonical Amino Acids.

Theresa Sophie Braun, Pia Widder, Uwe Osswald, Lina Groß, Lara Williams, Moritz Schmidt, Irina Helmle, Daniel Summerer, Malte Drescher

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Synthesis and Properties of (1International journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Compaction of RNA Duplexes in the Cell*.Angewandte Chemie (International ed. in English) · 2020
    Article
  10. Article
  11. Article
  12. Site-Directed Spin Labeling of RNA with aMolecules (Basel, Switzerland) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Theresa Sophie BraunDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.ORCID 0000-0003-2065-5840
Pia WidderDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.ORCID 0000-0002-5068-2658
Uwe OsswaldDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.
Lina GroßDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.ORCID 0000-0003-0489-6193
Lara WilliamsDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.ORCID 0000-0001-6879-938X
Moritz SchmidtDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.ORCID 0000-0002-1933-1999
Irina HelmleDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.
Daniel SummererFaculty of Chemistry and Chemical Biology, TU Dortmund, Otto-Hahn-Strasse 4a, 44227, Dortmund, Germany.ORCID 0000-0002-3019-7241
Malte DrescherDepartment of Chemistry, University of Konstanz, Universitätsstrasse 10, 78457, Konstanz, Germany.ORCID 0000-0002-3571-3452

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Electron paramagnetic resonance (EPR) spectroscopy in combination with site-directed spin labeling (SDSL) is a powerful tool in protein structural research. Nitroxides are highly suitable spin labeling reagents, but suffer from limited stability, particularly in the cellular environment. Herein we present the synthesis of a maleimide- and an azide-modified tetraethyl-shielded isoindoline-based nitroxide (M- and Az-TEIO) for labeling of cysteines or the noncanonical amino acid para-ethynyl-l-phenylalanine (pENF). We demonstrate the high stability of TEIO site-specifically attached to the protein thioredoxin (TRX) against reduction in prokaryotic and eukaryotic environments, and conduct double electron-electron resonance (DEER) measurements. We further generate a rotamer library for the new residue pENF-Az-TEIO that affords a distance distribution that is in agreement with the measured distribution.

Indexed as

AlkynesAmino AcidsAzidesCysteineElectron Spin Resonance SpectroscopyIsoindolesNitrogen OxidesSpin LabelsThioredoxinsAlkynesAmino AcidsAzidesCysteineIsoindolesNitrogen OxidesnitroxylSpin LabelsThioredoxinsbioresistanceEPR spectroscopymacromolecular dynamicsprotein conformation analysissite-directed spin labeling

Identifiers

PMID31657498
PMCPMC7187341

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.