Evidence map›Paper›PMID 31656586›Full record

ArticleF1000Research2019

Adaptation, fitness landscape learning and fast evolution.

John Reinitz, Sergey Vakulenko, Dmitri Grigoriev, Andreas Weber

Abstract read
In one paragraph

Article in F1000Research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

John ReinitzDepartments of Statistics, Ecology and Evolution, Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA.
Sergey VakulenkoSaint Petersburg National Research University of Information Technologies, Mechanics and Optics, Saint Petersburg, Russian Federation.
Dmitri GrigorievCNRS, Mathématiques, Université de Lille, Villeneuve d'Ascq, France.
Andreas WeberDepartment of Computer Science, University of Bonn, Bonn, Germany.ORCID 0000-0001-5624-3368

Funding

PHYSIOLOGICAL MODEL OF GENE REGULATION IN DROSOPHILAR01RR007801 · NCRR · UNIVERSITY OF CHICAGO · PI REINITZ, JOHN B. · 1992 to 2011
$6.3M
Physiological Model of Gene Regulation in DrosophilaR01OD010936 · OD · UNIVERSITY OF CHICAGO · PI ALLESINA, STEFANO, LUDWIG, MICHAEL · 2012 to 2023
$6.3M
NCRR NIH HHS R01 RR007801NIH HHS R01 OD010936
6 · The paper itself

Abstract

We consider evolution of a large population, where fitness of each organism is defined by many phenotypical traits. These traits result from expression of many genes. Under some assumptions on  fitness we prove that such model organisms  are capable, to some extent, to recognize the fitness landscape. That fitness landscape learning sharply reduces the number of mutations needed for adaptation. Moreover, this learning increases phenotype robustness with respect to mutations, i.e., canalizes the phenotype.  We show that learning and canalization work only when evolution is gradual. Organisms can be adapted to  many constraints associated with a hard environment, if that environment becomes harder step by step. Our results explain why evolution can involve genetic changes of a relatively large effect and why the total number of changes are surprisingly small.

Indexed as

Models, GeneticSelection, GeneticGenetic FitnessLearningMutationPhenotypeevolutionfitness landscape learninggene networks

Identifiers

PMID31656586
PMCPMC6798318

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.