Evidence map›Paper›PMID 31655617›Full record

ArticleRetrovirology2019

Effect of induced dNTP pool imbalance on HIV-1 reverse transcription in macrophages.

Caitlin Shepard, Joella Xu, Jessica Holler, Dong-Hyun Kim, Louis M Mansky, Raymond F Schinazi, Baek Kim

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Role of Monocyte/Macrophages in the Pathogenesis of NeuroHIV.Results and problems in cell differentiation · 2024
    Review
  6. Article
  7. Molecular Biology and Diversification of Human Retroviruses.Frontiers in virology (Lausanne, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Caitlin ShepardDepartment of Pediatrics, School of Medicine, Emory University, 1760 Haygood Drive E432, Atlanta, GA, 30322, USA.
Joella XuDepartment of Pediatrics, School of Medicine, Emory University, 1760 Haygood Drive E432, Atlanta, GA, 30322, USA.
Jessica HollerDepartment of Pediatrics, School of Medicine, Emory University, 1760 Haygood Drive E432, Atlanta, GA, 30322, USA.
Dong-Hyun KimSchool of Pharmacy, Kyung-Hee University, Seoul, South Korea.
Louis M ManskyInstitute for Molecular Virology, University of Minnesota, Minneapolis, MN, USA.
Raymond F SchinaziDepartment of Pediatrics, School of Medicine, Emory University, 1760 Haygood Drive E432, Atlanta, GA, 30322, USA.
Baek KimDepartment of Pediatrics, School of Medicine, Emory University, 1760 Haygood Drive E432, Atlanta, GA, 30322, USA. baek.kim@emory.edu.ORCID 0000-0001-7986-4335
Emory University · USKyung Hee University · KRUniversity of Minnesota · US

Funding

Lentivirus Replication Strategy and PathogenesisR01AI136581 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2018 to 2026
$3.9M
Towards Suppression and Elimination of HIV in the CNSR01MH116695 · NIMH · EMORY UNIVERSITY · PI SCHINAZI, RAYMOND FELIX, TYOR, WILLIAM R · 2018 to 2022
$3.4M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01AI150451 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2019 to 2019
$311k
NIAID NIH HHS R01 AI136581NIAID NIH HHS R01 AI150451NIMH NIH HHS R01 MH116695
6 · The paper itself

Abstract

backgroundTerminally differentiated/nondividing macrophages, a key target cell type of HIV-1, harbor extremely low dNTP concentrations established by a host dNTP triphosphohydrolase, SAM domain and HD domain containing protein 1 (SAMHD1). We tested whether the induction of dNTP pool imbalance can affect HIV-1 replication in macrophages. For this test, we induced a large dNTP pool imbalance by treating human primary monocyte derived macrophages with either one or three of the four deoxynucleosides (dNs), which are phosphorylated to dNTPs in cells, to establish two different dNTP imbalance conditions in macrophages.

resultsThe transduction efficiency and 2-LTR circle copy number of HIV-1 GFP vector were greatly diminished in human primary macrophages treated with the biased dN treatments, compared to the untreated macrophages. We also observed the induced dNTP bias blocked the production of infectious dual tropic HIV-1 89.6 in macrophages. Moreover, biochemical DNA synthesis by HIV-1 reverse transcriptase was significantly inhibited by the induced dNTP pool imbalance. Third, the induced dNTP bias increased the viral mutant rate by approximately 20-30% per a single cycle infection. Finally, unlike HIV-1, the single dN treatment did not significantly affect the transduction of SIV

conclusionCollectively, these data suggest that the elevated dNTP pool imbalance can induce kinetic block and mutation synthesis of HIV-1 in macrophages.

Indexed as

Cells, CulturedDeoxyribonucleotidesHIV-1HumansKineticsMacrophagesReverse TranscriptionSAM Domain and HD Domain-Containing Protein 1Virus ReplicationDeoxyribonucleotidesSAM Domain and HD Domain-Containing Protein 1dNTP pool imbalanceHIV-1MacrophagesMutagenesisReverse transcriptionSAMHD1

Identifiers

PMID31655617
PMCPMC6815395
OpenAlexW2981857886

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.