Evidence map›Paper›PMID 31654229›Full record

ArticleFunctional & integrative genomics2020

Evaluation of circulating leukocyte transcriptome and its relationship with immune function and blood markers in dairy cows during the transition period.

Andrea Minuti, Nusrat Jahan, Vincenzo Lopreiato, Fiorenzo Piccioli-Cappelli, Lorenzo Bomba, Stefano Capomaccio, Juan J Loor, Paolo Ajmone-Marsan, Erminio Trevisi

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In one paragraph

Article in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Andrea MinutiDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy. andrea.minuti@unicatt.it.ORCID http://orcid.org/0000-0002-0617-6571
Nusrat JahanDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy.
Vincenzo LopreiatoDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy.
Fiorenzo Piccioli-CappelliDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy.
Lorenzo BombaDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy.
Stefano CapomaccioDipartimento di Medicina Veterinaria, University of Perugia, Perugia, Italy.
Juan J LoorDepartment of Animal Sciences, Division of Nutritional Sciences, University of Illinois, Urbana, IL, USA.
Paolo Ajmone-MarsanDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy.
Erminio TrevisiDepartment of Animal Sciences, Food and Nutrition - DIANA, Faculty of Agriculture, Food and Environmental Science, Università Cattolica del Sacro Cuore, Via Emilia Parmense 84,, Piacenza, 29122, Italy.
Università Cattolica del Sacro Cuore · ITUniversity of Illinois Urbana-Champaign · USUniversity of Perugia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dairy cows during the transition period are faced with important physiological changes which include a dysfunctional immune system and an increased inflammatory state. New data are necessary to understand the key factors involved in the immune system regulation. Six dairy cows were sampled during transition period to investigate the leukocyte transcriptome changes and its relationship with blood biomarkers. Blood samples were collected at - 20 ± 2, - 3 ± 1, 3, and 7 days from parturition (DFP). Leukocyte transcriptome was analyzed by deep sequencing technology (Hiseq1000 Illumina, USA). Plasma was analyzed for metabolic biomarkers. Differentially expressed genes (DEG) were used to run an enrichment analysis through the Dynamic Impact Approach (DIA). Considering - 20 DFP as references time, the main KEGG impacted pathways were activated before calving (- 3 DFP) and were connected to lipid metabolism, lipid transport in plasma, and phagosome. The greatest differences were found after parturition with 281 DEG (179 upregulated and 102 downregulated). The activated pathways were mainly related to immunity and endocrine aspects, while metabolic pathways related to lipid and amino acid metabolism were inhibited. Plasma BHBA had a substantial inhibitory impact on KEGG pathways related to DNA replication and cell cycle, while plasma IL-1β had an inhibitory impact on fatty acid elongation in mitochondria and an activated impact in several pathways related to cellular energy metabolism. Overall, this study confirmed that many changes in lipid metabolism and immune competence of the circulating leukocytes occurred in dairy cow around calving. Interestingly, BHBA and IL-1β connected with the transcriptome.

Indexed as

Immune SystemParturitionTranscriptomeAnimalsBiomarkersCattleComputational BiologyEnergy MetabolismFemaleHigh-Throughput Nucleotide SequencingInflammationLactationLeukocytesLipid MetabolismLipidsPhagosomesBiomarkersLipidsDairy cowsImmune systemPlasma metabolitesRNA-SeqTranscriptomicsTransition period

Identifiers

PMID31654229
OpenAlexW2981384056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.