Evidence map›Paper›PMID 31653834›Full record

ArticleNature communications2019

DNA damage and transcription stress cause ATP-mediated redesign of metabolism and potentiation of anti-oxidant buffering.

Chiara Milanese, Cíntia R Bombardieri, Sara Sepe, Sander Barnhoorn, César Payán-Goméz, Donatella Caruso, Matteo Audano, Silvia Pedretti, Wilbert P Vermeij, Renata M C Brandt and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 75 citations in OpenAlex.

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  6. Disulfide-Bridged Ru Complex-Mediated Photo-Disulfidptosis for Colorectal Cancer Therapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  8. Coexistence of trapped and flow-transported nuclei enables fast pigeon post communication across multinucleated cell.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  19. Article
  20. Time is ticking faster for long genes in aging.Trends in genetics : TIG · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Chiara MilaneseDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0001-8696-2603
Cíntia R BombardieriDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Sara SepeDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Sander BarnhoornDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
César Payán-GomézDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0002-0633-1332
Donatella CarusoDepartment of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.ORCID http://orcid.org/0000-0003-2115-778X
Matteo AudanoDepartment of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.
Silvia PedrettiDepartment of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.
Wilbert P VermeijPrincess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands.
Renata M C BrandtDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Akos GyenisDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Mirjam M WamelinkDepartment of Clinical Chemistry, VU University Medical Center, Amsterdam, the Netherlands.
Annelieke S de WitDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Roel C JanssensDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
René LeenLaboratory of Genetic Metabolic Diseases, Academic Medical Center, Amsterdam, the Netherlands.
André B P van KuilenburgLaboratory of Genetic Metabolic Diseases, Academic Medical Center, Amsterdam, the Netherlands.
Nico MitroDepartment of Pharmacological and Biomolecular Sciences, University of Milan, Milan, Italy.ORCID http://orcid.org/0000-0002-5000-3619
Jan H J HoeijmakersDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands.
Pier G MastroberardinoDepartment of Molecular Genetics, Erasmus University Medical Center, Rotterdam, the Netherlands. p.g.mastroberardino@erasmusmc.nl.
Erasmus MC · NLUniversity of Milan · ITAmsterdam UMC Location University of Amsterdam · NLUniversity of Cologne · DEAmsterdam UMC Location Vrije Universiteit Amsterdam · NLPrincess Máxima Center · NLUniversity of L'Aquila · IT

Funding

THE IMPACT OF CELLULAR DEFENSE ON THE ROLE OF Ku80 IN GENOME MAINTENANCE AND LONGP01AG017242 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 1999 to 2023
$46.1M
Models for DNA repair and cell cycle control variantsU01ES011044 · NIEHS · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI VIJG, JAN · 2001 to 2006
$5.1M
NIA NIH HHS P01 AG017242NIEHS NIH HHS U01 ES011044
6 · The paper itself

Abstract

Accumulation of DNA lesions causing transcription stress is associated with natural and accelerated aging and culminates with profound metabolic alterations. Our understanding of the mechanisms governing metabolic redesign upon genomic instability, however, is highly rudimentary. Using Ercc1-defective mice and Xpg knock-out mice, we demonstrate that combined defects in transcription-coupled DNA repair (TCR) and in nucleotide excision repair (NER) directly affect bioenergetics due to declined transcription, leading to increased ATP levels. This in turn inhibits glycolysis allosterically and favors glucose rerouting through the pentose phosphate shunt, eventually enhancing production of NADPH-reducing equivalents. In NER/TCR-defective mutants, augmented NADPH is not counterbalanced by increased production of pro-oxidants and thus pentose phosphate potentiation culminates in an over-reduced redox state. Skin fibroblasts from the TCR disease Cockayne syndrome confirm results in animal models. Overall, these findings unravel a mechanism connecting DNA damage and transcriptional stress to metabolic redesign and protective antioxidant defenses.

Indexed as

Adenosine TriphosphateAllosteric RegulationAnimalsAntioxidantsCockayne SyndromeDNA-Binding ProteinsDNA DamageDNA Excision Repair Protein ERCC-5DNA RepairEndonucleasesFibroblastsGenomic InstabilityGlycolysisMetabolomicsMiceMice, KnockoutAdenosine TriphosphateAntioxidantsDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5EndonucleasesErcc1 protein, mouseNADPNuclear ProteinsTranscription Factors

Identifiers

PMID31653834
PMCPMC6814737
OpenAlexW2981924728

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.