Evidence map›Paper›PMID 31653714›Full record

ArticleRNA (New York, N.Y.)2020

An RNA guanine quadruplex regulated pathway to TRAIL-sensitization by DDX21.

Ewan K S McRae, Steven J Dupas, Evan P Booy, Ramanaguru S Piragasam, Richard P Fahlman, Sean A McKenna

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ewan K S McRaeDepartment of Chemistry, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2.ORCID 0000-0001-9105-2575
Steven J DupasDepartment of Chemistry, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2.ORCID 0000-0002-6253-8442
Evan P BooyDepartment of Chemistry, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2.ORCID 0000-0001-8529-456X
Ramanaguru S PiragasamDepartment of Biochemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2H7.ORCID 0000-0002-1897-9822
Richard P FahlmanDepartment of Biochemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2H7.ORCID 0000-0003-4104-6374
Sean A McKennaDepartment of Chemistry, University of Manitoba, Winnipeg, Manitoba, Canada R3T 2N2.ORCID 0000-0002-9407-7257
University of Manitoba · CAUniversity of Alberta · CA

Funding

CIHR 389449
6 · The paper itself

Abstract

DDX21 is a newly discovered RNA G-quadruplex (rG4) binding protein with no known biological rG4 targets. In this study we used label-free proteomic MS/MS to identify 26 proteins that are expressed at significantly different levels in cells expressing an rG4-binding deficient DDX21 (M4). MS data are available via ProteomeXchange with identifier PXD013501. From this list we validate MAGED2 as a protein that is regulated by DDX21 through rG4 in its 5'-UTR. MAGED2 protein levels, but not mRNA levels, are reduced by half in cells expressing DDX21 M4. MAGED2 has a repressive effect on TRAIL-R2 expression that is relieved under these conditions, resulting in elevated TRAIL-R2 mRNA and protein in MCF-7 cells, rendering them sensitive to TRAIL-mediated apoptosis. Our work identifies the role of DDX21 in regulation at the translational level through biologically relevant rG4 and shows that MAGED2 protein levels are regulated, at least in part, by the potential to form rG4 in their 5'-UTRs.

Indexed as

Gene Expression RegulationG-Quadruplexes5' Untranslated RegionsAdaptor Proteins, Signal TransducingAntigens, NeoplasmDEAD-box RNA HelicasesGuanineHumansMCF-7 CellsProtein BiosynthesisProteomicsReceptors, TNF-Related Apoptosis-Inducing LigandRNATandem Mass Spectrometry5' Untranslated RegionsAdaptor Proteins, Signal TransducingAntigens, NeoplasmDDX21 protein, humanDEAD-box RNA HelicasesGuanineMAGED2 protein, humanReceptors, TNF-Related Apoptosis-Inducing LigandRNATNFRSF10B protein, humanDDX21MAGED2proteomicsquadruplexRNATRAIL-R2

Identifiers

PMID31653714
PMCPMC6913123
OpenAlexW2981646850

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.