Evidence map›Paper›PMID 31653202›Full record

ArticleBMC genomics2019

Identification of CBL and CIPK gene families and functional characterization of CaCIPK1 under Phytophthora capsici in pepper (Capsicum annuum L.).

Xiao Ma, Wen-Xian Gai, Yi-Ming Qiao, Muhammad Ali, Ai-Min Wei, De-Xu Luo, Quan-Hui Li, Zhen-Hui Gong

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
16.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 86 citations in OpenAlex.

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  7. Genome-Wide Identification of Members of the SoybeanPlants (Basel, Switzerland) · 2024
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  11. Genome-wide discovery of CBL genes inForestry research · 2023
    Article
  12. Review
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  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xiao MaCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.
Wen-Xian GaiCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.
Yi-Ming QiaoCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.
Muhammad AliCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.
Ai-Min WeiTianjin Vegetable Research Center, Tianjin, 300192, People's Republic of China.
De-Xu LuoXuhuai Region Huaiyin Institute of Agricultural Sciences, Huaian, Jiangsu, 223001, People's Republic of China.
Quan-Hui LiCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.
Zhen-Hui GongCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China. zhgong@nwsuaf.edu.cn.
Northwest A&F University · CNHuaiyin Institute of Technology · CN

Funding

Independent Innovation Fund Project of Agricultural Science and Technology in Jiangsu CX(17)3040National Key R&D Program of China 2016YFD0101900National Natural Science Foundation of China 31272163National Natural Science Foundation of China U1603102
6 · The paper itself

Abstract

backgroundCalcineurin B-like proteins (CBLs) are major Ca

resultsIn the present study, nine CaCBL and 26 CaCIPK genes were identified in pepper and the genes were named based on their chromosomal order. Phylogenetic and structural analysis revealed that CaCBL and CaCIPK genes clustered in four and five groups, respectively. Quantitative real-time PCR (qRT-PCR) assays showed that CaCBL and CaCIPK genes were constitutively expressed in different tissues, and their expression patterns were altered when the plant was exposed to Phytophthora capsici, salt and osmotic stress. CaCIPK1 expression changed in response to stress, including exposure to P. capsici, NaCl, mannitol, salicylic acid (SA), methyl jasmonate (MeJA), abscisic acid (ABA), ethylene (ETH), cold and heat stress. Knocking down CaCIPK1 expression increased the susceptibility of pepper to P. capsici, reduced root activity, and altered the expression of defense related genes. Transient overexpression of CaCIPK1 enhanced H

conclusionsNine CaCBL and 26 CaCIPK genes were identified in the pepper genome, and the expression of most CaCBL and CaCIPK genes were altered when the plant was exposed to stress. In particular, we found that CaCIPK1 is mediates the pepper plant's defense against P. capsici. These results provide the groundwork for further functional characterization of CaCBL and CaCIPK genes in pepper.

Indexed as

CapsicumChromosomes, PlantGene DuplicationIntracellular SpacePhylogenyPhytophthoraPlant Growth RegulatorsPlant ProteinsProtein TransportSequence AnalysisStress, PhysiologicalPlant Growth RegulatorsPlant ProteinsAbiotic stressCaCIPK1CBL and CIPK familyGenome-widePepperPhytophthora capsici

Identifiers

PMID31653202
PMCPMC6814991
OpenAlexW2981650462

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.