Evidence map›Paper›PMID 31653200›Full record

ArticleBMC genomics2019

Comprehensive transcriptome analysis of grafting onto Artemisia scoparia W. to affect the aphid resistance of chrysanthemum (Chrysanthemum morifolium T.).

Xue-Ying Zhang, Xian-Zhi Sun, Sheng Zhang, Jing-Hui Yang, Fang-Fang Liu, Jie Fan

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xue-Ying ZhangCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Street, Taian, 271018, China.
Xian-Zhi SunCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Street, Taian, 271018, China. sunxianzhi@126.com.
Sheng ZhangCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Street, Taian, 271018, China.
Jing-Hui YangCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Street, Taian, 271018, China.
Fang-Fang LiuCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Street, Taian, 271018, China.
Jie FanCollege of Horticulture Science and Engineering, Shandong Agricultural University, 61 Daizong Street, Taian, 271018, China.
Shandong Agricultural University · CN

Funding

Shandong Forestry Science and Technology Innovation Project LYCX06-2018-33
6 · The paper itself

Abstract

backgroundAphid (Macrosiphoniella sanbourni) stress drastically influences the yield and quality of chrysanthemum, and grafting has been widely used to improve tolerance to biotic and abiotic stresses. However, the effect of grafting on the resistance of chrysanthemum to aphids remains unclear. Therefore, we used the RNA-Seq platform to perform a de novo transcriptome assembly to analyze the self-rooted grafted chrysanthemum (Chrysanthemum morifolium T. 'Hangbaiju') and the grafted Artermisia-chrysanthemum (grafted onto Artemisia scoparia W.) transcription response to aphid stress.

resultsThe results showed that there were 1337 differentially expressed genes (DEGs), among which 680 were upregulated and 667 were downregulated, in the grafted Artemisia-chrysanthemum compared to the self-rooted grafted chrysanthemum. These genes were mainly involved in sucrose metabolism, the biosynthesis of secondary metabolites, the plant hormone signaling pathway and the plant-to-pathogen pathway. KEGG and GO enrichment analyses revealed the coordinated upregulation of these genes from numerous functional categories related to aphid stress responses. In addition, we determined the physiological indicators of chrysanthemum under aphid stress, and the results were consistent with the molecular sequencing results. All evidence indicated that grafting chrysanthemum onto A. scoparia W. upregulated aphid stress responses in chrysanthemum.

conclusionIn summary, our study presents a genome-wide transcript profile of the self-rooted grafted chrysanthemum and the grafted Artemisia-chrysanthemum and provides insights into the molecular mechanisms of C. morifolium T. in response to aphid infestation. These data will contribute to further studies of aphid tolerance and the exploration of new candidate genes for chrysanthemum molecular breeding.

Indexed as

Gene Expression ProfilingHorticultureAnimalsAphidsArtemisiaChrysanthemumHost-Parasite InteractionsMolecular Sequence AnnotationStress, PhysiologicalAphid stressChrysanthemumGene expressionGraftingRNA-Seq

Identifiers

PMID31653200
PMCPMC6815057
OpenAlexW2981909191

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.