Evidence map›Paper›PMID 31652505›Full record

ArticleInternational journal of molecular sciences2019

Influence of the First Chromophore-Forming Residue on Photobleaching and Oxidative Photoconversion of EGFP and EYFP.

Tirthendu Sen, Anastasia V Mamontova, Anastasia V Titelmayer, Aleksander M Shakhov, Artyom A Astafiev, Atanu Acharya, Konstantin A Lukyanov, Anna I Krylov, Alexey M Bogdanov

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Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Tirthendu SenDepartment of Chemistry, University of Southern California, Los Angeles, CA 90089, USA. tirthens@usc.edu.ORCID 0000-0003-2913-5315
Anastasia V MamontovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia. sphingozin@gmail.com.ORCID 0000-0002-9255-6350
Anastasia V TitelmayerShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia. nastia131313@gmail.com.
Aleksander M ShakhovSemenov Federal Research Center for Chemical Physics, Moscow 119991, Russia. physics2007@yandex.ru.ORCID 0000-0002-0958-2903
Artyom A AstafievSemenov Federal Research Center for Chemical Physics, Moscow 119991, Russia. astafiev.artyom@gmail.com.
Atanu AcharyaDepartment of Chemistry, University of Southern California, Los Angeles, CA 90089, USA. atanuach04@gmail.com.
Konstantin A LukyanovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia. k.lukyanov@skoltech.ru.ORCID 0000-0001-9845-2088
Anna I KrylovDepartment of Chemistry, University of Southern California, Los Angeles, CA 90089, USA. krylov@usc.edu.
Alexey M BogdanovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow 117997, Russia. noobissat@ya.ru.ORCID 0000-0002-5346-789X
Institute of Bioorganic Chemistry · RUUniversity of Southern California · USMoscow Institute of Physics and Technology · RUSemenov Institute of Chemical Physics · RUSkolkovo Institute of Science and Technology · RU

Funding

Ministry of Education and Science of the Russian Federation RFMEFI62117X0018National Science Foundation CHE-1856342Semenov FRCCP RAS CCE 506694Российский Фонд Фундаментальных Исследований (РФФИ) 17-00-00404 (17-00-00403)Российский Фонд Фундаментальных Исследований (РФФИ) 19-04-00845
6 · The paper itself

Abstract

Enhanced green fluorescent protein (EGFP)-one of the most widely applied genetically encoded fluorescent probes-carries the threonine-tyrosine-glycine (TYG) chromophore. EGFP efficiently undergoes green-to-red oxidative photoconversion ("redding") with electron acceptors. Enhanced yellow fluorescent protein (EYFP), a close EGFP homologue (five amino acid substitutions), has a glycine-tyrosine-glycine (GYG) chromophore and is much less susceptible to redding, requiring halide ions in addition to the oxidants. In this contribution we aim to clarify the role of the first chromophore-forming amino acid in photoinduced behavior of these fluorescent proteins. To that end, we compared photobleaching and redding kinetics of EGFP, EYFP, and their mutants with reciprocally substituted chromophore residues, EGFP-T65G and EYFP-G65T. Measurements showed that T65G mutation significantly increases EGFP photostability and inhibits its excited-state oxidation efficiency. Remarkably, while EYFP-G65T demonstrated highly increased spectral sensitivity to chloride, it is also able to undergo redding chloride-independently. Atomistic calculations reveal that the GYG chromophore has an increased flexibility, which facilitates radiationless relaxation leading to the reduced fluorescence quantum yield in the T65G mutant. The GYG chromophore also has larger oscillator strength as compared to TYG, which leads to a shorter radiative lifetime (i.e., a faster rate of fluorescence). The faster fluorescence rate partially compensates for the loss of quantum efficiency due to radiationless relaxation. The shorter excited-state lifetime of the GYG chromophore is responsible for its increased photostability and resistance to redding. In EYFP and EYFP-G65T, the chromophore is stabilized by π-stacking with Tyr203, which suppresses its twisting motions relative to EGFP.

Indexed as

PhotobleachingAbsorption, RadiationAmino Acid MotifsEscherichia coliFluorescence Recovery After PhotobleachingGreen Fluorescent ProteinsMutation, MissenseOxidation-ReductionUltraviolet RaysGreen Fluorescent Proteinsatomistic calculationschromophoreexcited-state lifetimefluorescence spectroscopyfluorescent proteinsGFPlight-induced oxidationphotostabilityquantum mechanics/molecular mechanics (QM/MM)redding

Identifiers

PMID31652505
PMCPMC6829896
OpenAlexW2980870640

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.