ArticleGenome biology2019
Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota.
Article in Genome biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.
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Who cites it
31 citing papers in PubMed, 1 synthesis or guideline pooled it, 97 citations in OpenAlex.
- A global meta-analysis of animal manure application and soil microbial ecology based on random control treatments.PloS one · 2022Pooled it
- Rice-crayfish farming mode drives distinct soil properties and ecological assembly of soil microbiome.Microbiology spectrum · 2026Article
- Genotype-Specific Rhizosphere Microbiome Assembly Mediates Biochar-Induced Salt Tolerance in Sorghum.Current issues in molecular biology · 2026Article
- Adaptation to Climatic Change and Epigenetic Modifications of Soil Microbiome.Advances in experimental medicine and biology · 2026Review
- Beyond Monoculture: A Comparative Analysis of Soil Properties and Grain Quality in Rice-Based Co-Culture Systems.Biology · 2025Article
- Unveiling the hidden allies of industrial chicory-a metagenomic exploration of rhizosphere microbiota and their impact on productivity and plant health.Frontiers in microbiology · 2025Article
- Effect of plant-derived microbial soil legacy in a grafting system-a turn for the better.Microbiome · 2024Article
- The soil microbiome of Lolium perenne L. depends on host genotype, is modified by nitrogen level and varies across season.Scientific reports · 2024Article
- The plant endomicrobiome: Structure and strategies to produce stress resilient future crop.Current research in microbial sciences · 2024Review
- Recycled Household Ash in Rice Paddies of Bangladesh for Sustainable Production of Rice Without Altering Grain Arsenic and Cadmium.Exposure and health · 2024Article
- Nutrient and Microbiome-Mediated Plant-Soil Feedback in Domesticated and Wild Andropogoneae: Implications for Agroecosystems.Microorganisms · 2023Article
- Effects of allyl isothiocyanate fumigation on medicinal plant root knot disease control, plant survival, and the soil bacterial community.BMC microbiology · 2023Article
- The microbiome of cereal plants: The current state of knowledge and the potential for future applications.Environmental microbiome · 2023Review
- Ecological Processes of Bacterial and Fungal Communities Associated withMicrobiology spectrum · 2023Article
- Quantitative genetic-by-soil microbiome interactions in a perennial grass affect functional traits.Proceedings. Biological sciences · 2023Article
- Defining Composition and Function of the Rhizosphere Microbiota of Barley Genotypes Exposed to Growth-Limiting Nitrogen Supplies.mSystems · 2022Article
- Altering Microbiomes with Hydroxyapatite Nanoparticles: A Metagenomic Analysis.Materials (Basel, Switzerland) · 2022Article
- Shifts in rhizosphere microbial communities in Oplopanax elatus Nakai are related to soil chemical properties under different growth conditions.Scientific reports · 2022Article
- The root signals in rhizospheric inter-organismal communications.Frontiers in plant science · 2022Review
- Short-Term Legacy Effects of Mercury Contamination on Plant Growth and nifH-Harboring Microbial Community in Rice Paddy Soil.Microbial ecology · 2021Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundSoils are a key component of agricultural productivity, and soil microbiota determine the availability of many essential plant nutrients. Agricultural domestication of soils, that is, the conversion of previously uncultivated soils to a cultivated state, is frequently accompanied by intensive monoculture, especially in the developing world. However, there is limited understanding of how continuous cultivation alters the structure of prokaryotic soil microbiota after soil domestication, including to what extent crop plants impact soil microbiota composition, and how changes in microbiota composition arising from cultivation affect crop performance.
resultsWe show here that continuous monoculture (> 8 growing seasons) of the major food crop rice under flooded conditions is associated with a pronounced shift in soil bacterial and archaeal microbiota structure towards a more consistent composition, thereby domesticating microbiota of previously uncultivated sites. Aside from the potential effects of agricultural cultivation practices, we provide evidence that rice plants themselves are important drivers of the domestication process, acting through selective enrichment of specific taxa, including methanogenic archaea, in their rhizosphere that differ from those of native plants growing in the same environment. Furthermore, we find that microbiota from soils domesticated by rice cultivation contribute to plant-soil feedback, by imparting a negative effect on rice seedling vigor.
conclusionsSoil domestication through continuous monoculture cultivation of rice results in compositional changes in the soil microbiota, which are in part driven by the rice plants. The consequences include a negative impact on plant performance and increases in greenhouse gas emitting microbes.
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