Evidence map›Paper›PMID 31651220›Full record

ArticleOmics : a journal of integrative biology2019

Mapping Keratoconus Molecular Substrates by Multiplexed High-Resolution Proteomics of Unpooled Corneas.

Vishal Shinde, Nan Hu, Santosh Renuse, Alka Mahale, Akhilesh Pandey, Charles Eberhart, Donald Stone, Samar A Al-Swailem, Azza Maktabi, Shukti Chakravarti

Open access · greenAbstract read
In one paragraph

Article in Omics : a journal of integrative biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
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  8. The Role of the Ubiquitin System in Eye Diseases.Life (Basel, Switzerland) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Vishal ShindeDepartment of Ophthalmology, NYU Langone Health, New York, New York.
Nan HuDepartment of Ophthalmology, NYU Langone Health, New York, New York.
Santosh RenuseDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Alka MahaleResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Akhilesh PandeyDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, Minnesota.
Charles EberhartPathology, Ophthalmology and Oncology Department, Johns Hopkins Hospital, Baltimore, Maryland.
Donald StoneDepartment of Ophthalmology, Johns Hopkins University, Baltimore, Maryland.
Samar A Al-SwailemAnterior Segment Division, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Azza MaktabiDepartment of Pathology, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Shukti ChakravartiDepartment of Ophthalmology, NYU Langone Health, New York, New York.
King Khaled Eye Specialist Hospital · SANYU Langone Health · USMayo Clinic · USJohns Hopkins University · US

Funding

TGF beta and AKT signal-driven pathogenesis in keratoconusR01EY026104 · NEI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Shukti Chakravarti · 2016 to 2026
$4.2M
NEI NIH HHS R01 EY026104
6 · The paper itself

Abstract

Keratoconus (KCN) is a leading cause for cornea grafting worldwide. Keratoconus is a multifactorial disease that causes progressive thinning of the cornea and whose etiology is poorly understood. Several studies have used proteomics on patient tear fluids to identify potential biomarkers. However, proteome of the cornea itself has not been investigated fully. We report here new findings from a case-control study using multiplexed mass spectrometry (MS) on individual (unpooled) corneas to gain deeper insights into proteins and biomarkers relevant to keratoconus. We employed a high-pressure approach to extract total protein from individual corneas from five cases and five controls, followed by trypsin digestion and tandem mass tag (TMT) labeling. The MS-derived data were searched using the Human NCBI RefSeq protein database v92, with peptides and proteins filtered at 1% false discovery rate. A total of 3132 proteins were detected, of which 627 were altered significantly (

Indexed as

ProteomeProteomicsBiological TransportBiomarkersCase-Control StudiesChromatography, LiquidCorneaDisease SusceptibilityExtracellular MatrixKeratoconusMass SpectrometryNonsense Mediated mRNA DecayProteasome Endopeptidase ComplexUbiquitinWorkflowBiomarkersProteasome Endopeptidase ComplexProteomeUbiquitincomplementcorneaER stresskeratoconusproteasomal degradationproteomics

Identifiers

PMID31651220
PMCPMC6857467
OpenAlexW2982151747

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.