Evidence map›Paper›PMID 31650956›Full record

ArticleeLife2019

The human coronavirus HCoV-229E S-protein structure and receptor binding.

Zhijie Li, Aidan Ca Tomlinson, Alan Hm Wong, Dongxia Zhou, Marc Desforges, Pierre J Talbot, Samir Benlekbir, John L Rubinstein, James M Rini

Abstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed.

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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhijie LiDepartment of Molecular Genetics, The University of Toronto, Toronto, Canada.ORCID 0000-0001-9283-6072
Aidan Ca TomlinsonDepartment of Biochemistry, The University of Toronto, Toronto, Canada.
Alan Hm WongDepartment of Biochemistry, The University of Toronto, Toronto, Canada.
Dongxia ZhouDepartment of Molecular Genetics, The University of Toronto, Toronto, Canada.
Marc DesforgesLaboratory of Neuroimmunovirology, INRS-Institut Armand-Frappier, Institut National de la Recherche Scientifique, Université du Québec, Laval, Canada.
Pierre J TalbotLaboratory of Neuroimmunovirology, INRS-Institut Armand-Frappier, Institut National de la Recherche Scientifique, Université du Québec, Laval, Canada.
Samir BenlekbirMolecular Medicine Program, The Hospital for Sick Children Research Institute, Toronto, Canada.
John L RubinsteinDepartment of Biochemistry, The University of Toronto, Toronto, Canada.ORCID 0000-0003-0566-2209
James M RiniDepartment of Molecular Genetics, The University of Toronto, Toronto, Canada.ORCID 0000-0002-0952-2409

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The coronavirus S-protein mediates receptor binding and fusion of the viral and host cell membranes. In HCoV-229E, its receptor binding domain (RBD) shows extensive sequence variation but how S-protein function is maintained is not understood. Reported are the X-ray crystal structures of Class III-V RBDs in complex with human aminopeptidase N (hAPN), as well as the electron cryomicroscopy structure of the 229E S-protein. The structures show that common core interactions define the specificity for hAPN and that the peripheral RBD sequence variation is accommodated by loop plasticity. The results provide insight into immune evasion and the cross-species transmission of 229E and related coronaviruses. We also find that the 229E S-protein can expose a portion of its helical core to solvent. This is undoubtedly facilitated by hydrophilic subunit interfaces that we show are conserved among coronaviruses. These interfaces likely play a role in the S-protein conformational changes associated with membrane fusion.

Indexed as

CD13 AntigensCoronavirus 229E, HumanCryoelectron MicroscopyCrystallography, X-RayHumansProtein BindingProtein DomainsSpike Glycoprotein, CoronavirusCD13 AntigensSpike Glycoprotein, Coronavirusbiochemistrychemical biologycoronaviruselectron cryomicroscopyHCoV-229Espike proteinvirusx-ray crystallography

Identifiers

PMID31650956
PMCPMC6970540

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.