Evidence map›Paper›PMID 31649849›Full record

ArticleActa pharmaceutica Sinica. B2019

Orthogonal assays for the identification of inhibitors of the single-stranded nucleic acid binding protein YB-1.

AlexanderJ Trevarton, Yan Zhou, Dehua Yang, Gordon W Rewcastle, Jack U Flanagan, Antony Braithwaite, Peter R Shepherd, Cristin G Print, Ming-Wei Wang, Annette Lasham

Open access · diamondAbstract read
In one paragraph

Article in Acta pharmaceutica Sinica. B, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
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  6. Biological roles of RNA mBiomarker research · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

AlexanderJ TrevartonDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Yan ZhouThe National Center for Drug Screening and the CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai 201203, China.
Dehua YangThe National Center for Drug Screening and the CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai 201203, China.
Gordon W RewcastleAuckland Cancer Society Research Centre, Auckland, New Zealand.
Jack U FlanaganAuckland Cancer Society Research Centre, Auckland, New Zealand.
Antony BraithwaiteDepartment of Pathology, Dunedin School of Medicine, University of Otago, Dunedin, New Zealand.
Peter R ShepherdDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Cristin G PrintDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
Ming-Wei WangThe National Center for Drug Screening and the CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (CAS), Shanghai 201203, China.
Annette LashamDepartment of Molecular Medicine and Pathology, University of Auckland, Auckland, New Zealand.
University of Auckland · NZNational Center for Drug Screening · CNCancer Society of New Zealand · NZMaurice Wilkins Centre · NZShanghai Institute of Materia Medica · CNUniversity of Otago · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have previously shown that high expression of the nucleic acid binding factor YB-1 is strongly associated with poor prognosis in a variety of cancer types. The 3-dimensional protein structure of YB-1 has yet to be determined and its role in transcriptional regulation remains elusive. Drug targeting of transcription factors is often thought to be difficult and there are very few published high-throughput screening approaches. YB-1 predominantly binds to single-stranded nucleic acids, adding further difficulty to drug discovery. Therefore, we have developed two novel screening assays to detect compounds that interfere with the transcriptional activation properties of YB-1, both of which may be generalizable to screen for inhibitors of other nucleic acid binding molecules. The first approach is a cell-based luciferase reporter gene assay that measures the level of activation of a fragment of the

Indexed as

AlphaScreenCancercDNA, complementary DNACSD, cold shock domainCTD, C-terminal domainDMSO, dimethylsulfoxidedsDNA, double-stranded DNAE2F1, E2F transcription factor 1EGR1, early growth response 1HTS, high-throughput screeningLuciferaseNTD, N-terminal domainshRNA, short-hairpin RNASingle-stranded DNAsiRNA, small-interfering RNAssDNA, single-stranded DNATranscription factorYB-1YB-1, Y-box binding protein-1YBX1, Y-box binding protein gene 1

Identifiers

PMID31649849
PMCPMC6804448
OpenAlexW2907128269

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.