Evidence map›Paper›PMID 31649317›Full record

ArticleScientific reports2019

Cryo-Gel embedding compound for renal biopsy biobanking.

Malou L H Snijders, Marina Zajec, Laurens A J Walter, Remco M A A de Louw, Monique H A Oomen, Shazia Arshad, Thierry P P van den Bosch, Lennard J M Dekker, Michail Doukas, Theo M Luider and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Malou L H SnijdersDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands. m.snijders@erasmusmc.nl.ORCID http://orcid.org/0000-0001-6295-2291
Marina ZajecDepartment of Neurology, Erasmus MC, Rotterdam, The Netherlands.
Laurens A J WalterDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Remco M A A de LouwDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Monique H A OomenDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Shazia ArshadDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Thierry P P van den BoschDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Lennard J M DekkerDepartment of Neurology, Erasmus MC, Rotterdam, The Netherlands.
Michail DoukasDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-8611-840X
Theo M LuiderDepartment of Neurology, Erasmus MC, Rotterdam, The Netherlands.
Peter H J RiegmanDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Folkert J van KemenadeDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.
Marian C Clahsen-van GroningenDepartment of Pathology, Erasmus MC, Rotterdam, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Optimal preservation and biobanking of renal tissue is vital for good diagnostics and subsequent research. Optimal cutting temperature (OCT) compound is a commonly used embedding medium for freezing tissue samples. However, due to interfering polymers in OCT, analysis as mass spectrometry (MS) is difficult. We investigated if the replacement of OCT with Cryo-Gel as embedding compound for renal biopsies would enable proteomics and not disturb other common techniques used in tissue diagnostics and research. For the present study, fresh renal samples were snap-frozen using Cryo-Gel, OCT and without embedding compound and evaluated using different techniques. In addition, tissue samples from normal spleen, skin, liver and colon were analyzed. Cryo-Gel embedded tissues showed good morphological preservation and no interference in immunohistochemical or immunofluorescent investigations. The quality of extracted RNA and DNA was good. The number of proteins identified using MS was similar between Cryo-Gel embedded samples, samples without embedding compound and OCT embedded samples. However, polymers in the OCT disturbed the signal in the MS, while this was not observed in the Cryo-Gel embedded samples. We conclude that embedding of renal biopsies in Cryo-Gel is an excellent and preferable alternative for OCT compound for both diagnostic and research purposes, especially in those cases where proteomic analysis might be necessary.

Indexed as

Biological Specimen BanksBiopsyColonHumansKidneyLiverProteomeProteomicsSkinSpleenTandem Mass SpectrometryTissue EmbeddingProteome

Identifiers

PMID31649317
PMCPMC6813323

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.