Evidence map›Paper›PMID 31649265›Full record

ArticleNature communications2019

Structural transitions during the scaffolding-driven assembly of a viral capsid.

Athanasios Ignatiou, Sandrine Brasilès, Mehdi El Sadek Fadel, Jörg Bürger, Thorsten Mielke, Maya Topf, Paulo Tavares, Elena V Orlova

Abstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Capsid Structure ofJournal of virology · 2021
    Article
  14. High Resolution Structure of the Mature Capsid ofInternational journal of molecular sciences · 2021
    Article
  15. Temporal compartmentalization of viral infection in bacterial cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Review
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Athanasios IgnatiouInstitute of Structural and Molecular Biology, Birkbeck College, Malet Street, London, WC1E 7HX, UK.
Sandrine BrasilèsDepartment of Virology, Institut de Biologie Intégrative de la Cellule (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198, Gif-sur-Yvette, France.
Mehdi El Sadek FadelDepartment of Virology, Institut de Biologie Intégrative de la Cellule (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198, Gif-sur-Yvette, France.
Jörg BürgerMax-Planck-Institut für Molekulare Genetik, Microscopy and Cryo-Electron Microscopy Group, Ihnestraße 63-73, 14195, Berlin, Germany.
Thorsten MielkeMax-Planck-Institut für Molekulare Genetik, Microscopy and Cryo-Electron Microscopy Group, Ihnestraße 63-73, 14195, Berlin, Germany.ORCID http://orcid.org/0000-0001-9275-3146
Maya TopfInstitute of Structural and Molecular Biology, Birkbeck College, Malet Street, London, WC1E 7HX, UK.
Paulo TavaresDepartment of Virology, Institut de Biologie Intégrative de la Cellule (I2BC), CEA, CNRS, Université Paris-Sud, Université Paris-Saclay, 91198, Gif-sur-Yvette, France. paulo.tavares@i2bc.paris-saclay.fr.
Elena V OrlovaInstitute of Structural and Molecular Biology, Birkbeck College, Malet Street, London, WC1E 7HX, UK. e.orlova@mail.cryst.bbk.ac.uk.ORCID http://orcid.org/0000-0003-3371-415X

Funding

Biotechnology and Biological Sciences Research Council B17360Biotechnology and Biological Sciences Research Council BB/F012705/1
6 · The paper itself

Abstract

Assembly of tailed bacteriophages and herpesviruses starts with formation of procapsids (virion precursors without DNA). Scaffolding proteins (SP) drive assembly by chaperoning the major capsid protein (MCP) to build an icosahedral lattice. Here we report near-atomic resolution cryo-EM structures of the bacteriophage SPP1 procapsid, the intermediate expanded procapsid with partially released SPs, and the mature capsid with DNA. In the intermediate state, SPs are bound only to MCP pentons and to adjacent subunits from hexons. SP departure results in the expanded state associated with unfolding of the MCP N-terminus and straightening of E-loops. The newly formed extensive inter-capsomere bonding appears to compensate for release of SPs that clasp MCP capsomeres together. Subsequent DNA packaging instigates bending of MCP A domain loops outwards, closing the hexons central opening and creating the capsid auxiliary protein binding interface. These findings provide a molecular basis for the sequential structural rearrangements during viral capsid maturation.

Indexed as

Virus AssemblyBacteriophagesCapsidCapsid ProteinsCryoelectron MicroscopyCrystallography, X-RayViral Structural ProteinsCapsid ProteinsViral Structural Proteins

Identifiers

PMID31649265
PMCPMC6813328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.