Evidence map›Paper›PMID 31648791›Full record

ArticleBiophysical journal2019

DLITE Uses Cell-Cell Interface Movement to Better Infer Cell-Cell Tensions.

Ritvik Vasan, Mary M Maleckar, C David Williams, Padmini Rangamani

Abstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Apico-basal intercalations enable the integrity of curved epithelia.Computational and structural biotechnology journal · 2025
    Article
  5. Review
  6. Configurational fingerprints of multicellular living systems.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ritvik VasanDepartment of Mechanical and Aerospace Engineering, University of California, San Diego, San Diego, California.
Mary M MaleckarAllen Institute for Cell Science, Seattle, Washington.
C David WilliamsAllen Institute for Cell Science, Seattle, Washington. Electronic address: cdavew@alleninstitute.org.
Padmini RangamaniDepartment of Mechanical and Aerospace Engineering, University of California, San Diego, San Diego, California. Electronic address: padmini.rangamani@eng.ucsd.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell shapes and connectivities evolve over time as the colony changes shape or embryos develop. Shapes of intercellular interfaces are closely coupled with the forces resulting from actomyosin interactions, membrane tension, or cell-cell adhesions. Although it is possible to computationally infer cell-cell forces from a mechanical model of collective cell behavior, doing so for temporally evolving forces in a manner robust to digitization difficulties is challenging. Here, we introduce a method for dynamic local intercellular tension estimation (DLITE) that infers such evolution in temporal force with less sensitivity to digitization ambiguities or errors. This method builds upon previous work on single time points (cellular force-inference toolkit). We validate our method using synthetic geometries. DLITE's inferred cell colony tension evolutions correlate better with ground truth for these synthetic geometries as compared to tension values inferred from methods that consider each time point in isolation. We introduce cell connectivity errors, angle estimate errors, connection mislocalization, and connection topological changes to synthetic data and show that DLITE has reduced sensitivity to these conditions. Finally, we apply DLITE to time series of human-induced pluripotent stem cell colonies with endogenously expressed GFP-tagged zonulae occludentes-1. We show that DLITE offers improved stability in the inference of cell-cell tensions and supports a correlation between the dynamics of cell-cell forces and colony rearrangement.

Indexed as

Cell CommunicationBiomechanical PhenomenaExtracellular SpaceHumansImaging, Three-DimensionalInduced Pluripotent Stem CellsMitosisReproducibility of ResultsTight JunctionsTime FactorsZonula Occludens-1 ProteinZonula Occludens-1 Protein

Identifiers

PMID31648791
PMCPMC6838938

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.