Evidence map›Paper›PMID 31647845›Full record

ArticlePloS one2019

Comparative transcriptome analysis of galls from four different host plants suggests the molecular mechanism of gall development.

Seiji Takeda, Makiko Yoza, Taisuke Amano, Issei Ohshima, Tomoko Hirano, Masa H Sato, Tomoaki Sakamoto, Seisuke Kimura

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Seiji TakedaGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.ORCID 0000-0003-0183-7390
Makiko YozaGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
Taisuke AmanoGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
Issei OhshimaGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.ORCID 0000-0001-8295-9749
Tomoko HiranoGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
Masa H SatoGraduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
Tomoaki SakamotoDepartment of Bioresource and Environmental Sciences, Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan.
Seisuke KimuraDepartment of Bioresource and Environmental Sciences, Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan.ORCID 0000-0002-6796-3675
Kyoto Prefectural University · JPKyoto Sangyo University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Galls are plant structures generated by gall-inducing organisms including insects, nematodes, fungi, bacteria and viruses. Those made by insects generally consist of inner callus-like cells surrounded by lignified hard cells, supplying both nutrients and protection to the gall insects living inside. This indicates that gall insects hijack developmental processes in host plants to generate tissues for their own use. Although galls are morphologically diverse, the molecular mechanism for their development remains poorly understood. To identify genes involved in gall development, we performed RNA-sequencing based transcriptome analysis for leaf galls. We examined the young and mature galls of Glochidion obovatum (Phyllanthaceae), induced by the micromoth Caloptilia cecidophora (Lepidoptera: Gracillariidae), the leaf gall from Eurya japonica (Pentaphylacaceae) induced by Borboryctis euryae (Lepidoptera: Gracillariidae), and the strawberry-shaped leaf gall from Artemisia montana (Asteraceae) induced by gall midge Rhopalomyia yomogicola (Oligotrophini: Cecidomyiidae). Gene ontology (GO) analyses suggested that genes related to developmental processes are up-regulated, whereas ones related to photosynthesis are down-regulated in these three galls. Comparison of transcripts in these three galls together with the gall on leaves of Rhus javanica (Anacardiaceae), induced by the aphid Schlechtendalia chinensis (Hemiptera: Aphidoidea), suggested 38 genes commonly up-regulated in galls from different plant species. GO analysis showed that peptide biosynthesis and metabolism are commonly involved in the four different galls. Our results suggest that gall development involves common processes across gall inducers and plant taxa, providing an initial step towards understanding how they manipulate host plant developmental systems.

Indexed as

Gene Expression ProfilingTranscriptomeCell DivisionComputational BiologyGene Expression Regulation, PlantGene OntologyHost-Parasite InteractionsHost-Pathogen InteractionsPhenotypePlant TumorsReactive Oxygen SpeciesSignal TransductionSpecies SpecificityReactive Oxygen Species

Identifiers

PMID31647845
PMCPMC6812778
OpenAlexW2981795654

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.