Evidence map›Paper›PMID 31647423›Full record

ArticleIEEE transactions on medical imaging2020

3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography Images.

Jiong Zhang, Yuchuan Qiao, Mona Sharifi Sarabi, Maziyar M Khansari, Jin K Gahm, Amir H Kashani, Yonggang Shi

Abstract read
In one paragraph

Article in IEEE transactions on medical imaging, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Strip-Scanning for Efficient Widefield Retinal OCTA Mosaicking.Translational vision science & technology · 2026
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  18. 3D Retinal Vessel Density Mapping With OCT-Angiography.IEEE journal of biomedical and health informatics · 2020
    Article
  19. Review
  20. LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jiong Zhang
Yuchuan Qiao
Mona Sharifi Sarabi
Maziyar M Khansari
Jin K Gahm
Amir H Kashani
Yonggang Shi

Funding

TR&D3: Intrinsic Surface MappingP41EB015922 · NIBIB · UNIVERSITY OF SOUTHERN CALIFORNIA · PI VAN HORN, JOHN DARRELL · 2012 to 2022
$14.1M
Ophthalmic Therapeutics Engineering CoreP30EY029220 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Mahnaz Shahidi · 2018 to 2026
$6.5M
Imaging Cerebral and Retinal Microvasculature in Cerebral Small Vessel DiseaseUH3NS100614 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KASHANI, AMIR H, RINGMAN, JOHN M · 2018 to 2020
$4.3M
Human Connectomes for Low Vision, Blindness, and Sight RestorationU01EY025864 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI AGUIRRE, GEOFFREY KARL, PATEL, VIVEK R. · 2015 to 2018
$4.0M
Functional Imaging in Hypoxic-Ischemic Retinal DiseaseK08EY027006 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KASHANI, AMIR H · 2016 to 2020
$978k
3D OCT Angiography for quantitative characterization of diabetic retinopathyR21EY027879 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KASHANI, AMIR H, SHI, YONGGANG · 2017 to 2018
$454k
NEI NIH HHS K08 EY027006NEI NIH HHS P30 EY029220NEI NIH HHS R21 EY027879NEI NIH HHS U01 EY025864NIBIB NIH HHS P41 EB015922NINDS NIH HHS UH3 NS100614
6 · The paper itself

Abstract

3D optical coherence tomography angiography (OCT-A) is a novel and non-invasive imaging modality for analyzing retinal diseases. The studies of microvasculature in 2D en face projection images have been widely implemented, but comprehensive 3D analysis of OCT-A images with rich depth-resolved microvascular information is rarely considered. In this paper, we propose a robust, effective, and automatic 3D shape modeling framework to provide a high-quality 3D vessel representation and to preserve valuable 3D geometric and topological information for vessel analysis. Effective vessel enhancement and extraction steps by means of curvelet denoising and optimally oriented flux (OOF) filtering are first designed to produce 3D microvascular networks. Afterwards, a novel 3D data representation of OCT-A microvasculature is reconstructed via advanced mesh reconstruction techniques. Based on the 3D surfaces, shape analysis is established to extract novel shape-based microvascular area distortion via the Laplace-Beltrami eigen-projection. The extracted feature is integrated into a graph-cut segmentation system to categorize large vessels and small capillaries for more precise shape analysis. The proposed framework is validated on a dedicated repeated scan dataset including 260 volume images and shows high repeatability. Statistical analysis using the surface area biomarker is performed on small capillaries to avoid the effect of tailing artifact from large vessels. It shows significant differences ( ) between DR stages on 100 subjects in a OCTA-DR dataset. The proposed shape modeling and analysis framework opens the possibility for further investigating OCT-A microvasculature in a new perspective.

Indexed as

AngiographyRetinal VesselsFluorescein AngiographyMicrovesselsRetinaTomography, Optical Coherence

Identifiers

PMID31647423
PMCPMC7174137

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.