Evidence map›Paper›PMID 31647103›Full record

ArticleNucleic acids research2020

Inactivation of folylpolyglutamate synthetase Met7 results in genome instability driven by an increased dUTP/dTTP ratio.

Tobias T Schmidt, Sushma Sharma, Gloria X Reyes, Anna Kolodziejczak, Tina Wagner, Brian Luke, Anders Hofer, Andrei Chabes, Hans Hombauer

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Neural Tube Defects and Folate Deficiency: Is DNA Repair Defective?International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Tobias T SchmidtDNA Repair Mechanisms and Cancer, German Cancer Research Center (DKFZ), Heidelberg D-69120, Germany.
Sushma SharmaDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87 Sweden.
Gloria X ReyesDNA Repair Mechanisms and Cancer, German Cancer Research Center (DKFZ), Heidelberg D-69120, Germany.
Anna KolodziejczakDNA Repair Mechanisms and Cancer, German Cancer Research Center (DKFZ), Heidelberg D-69120, Germany.
Tina WagnerInstitute of Developmental Biology and Neurobiology, Johannes Gutenberg Universität, 55128 Mainz, Germany.
Brian LukeInstitute of Developmental Biology and Neurobiology, Johannes Gutenberg Universität, 55128 Mainz, Germany.
Anders HoferDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87 Sweden.
Andrei ChabesDepartment of Medical Biochemistry and Biophysics, Umeå University, Umeå SE-901 87 Sweden.
Hans HombauerDNA Repair Mechanisms and Cancer, German Cancer Research Center (DKFZ), Heidelberg D-69120, Germany.
German Cancer Research Center · DEUmeå University · SEJohannes Gutenberg University Mainz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The accumulation of mutations is frequently associated with alterations in gene function leading to the onset of diseases, including cancer. Aiming to find novel genes that contribute to the stability of the genome, we screened the Saccharomyces cerevisiae deletion collection for increased mutator phenotypes. Among the identified genes, we discovered MET7, which encodes folylpolyglutamate synthetase (FPGS), an enzyme that facilitates several folate-dependent reactions including the synthesis of purines, thymidylate (dTMP) and DNA methylation. Here, we found that Met7-deficient strains show elevated mutation rates, but also increased levels of endogenous DNA damage resulting in gross chromosomal rearrangements (GCRs). Quantification of deoxyribonucleotide (dNTP) pools in cell extracts from met7Δ mutant revealed reductions in dTTP and dGTP that cause a constitutively active DNA damage checkpoint. In addition, we found that the absence of Met7 leads to dUTP accumulation, at levels that allowed its detection in yeast extracts for the first time. Consequently, a high dUTP/dTTP ratio promotes uracil incorporation into DNA, followed by futile repair cycles that compromise both mitochondrial and nuclear DNA integrity. In summary, this work highlights the importance of folate polyglutamylation in the maintenance of nucleotide homeostasis and genome stability.

Indexed as

Genome, FungalCell NucleusDeoxyguanine NucleotidesDeoxyuracil NucleotidesDNA DamageDNA, FungalFolic AcidGene DeletionGene Expression Regulation, FungalGenomic InstabilityMitochondriaMutationPeptide SynthasesSaccharomyces cerevisiaeThymine NucleotidesUracilDeoxyguanine Nucleotidesdeoxyguanosine triphosphateDeoxyuracil Nucleotidesdeoxyuridine triphosphateDNA, FungalFolic Acidfolylpolyglutamate synthetasePeptide Synthasesthymidine 5'-triphosphateThymine NucleotidesUracil

Identifiers

PMID31647103
PMCPMC7145683
OpenAlexW2981910475

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.