Evidence map›Paper›PMID 31645966›Full record

ReviewHorticulture research2019

Genome sequences of horticultural plants: past, present, and future.

Fei Chen, Yunfeng Song, Xiaojiang Li, Junhao Chen, Lan Mo, Xingtan Zhang, Zhenguo Lin, Liangsheng Zhang

Open access · goldAbstract readReview
In one paragraph

Review in Horticulture research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 153 citations in OpenAlex.

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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Fei Chen1College of Horticulture, Nanjing Agricultural University, Nanjing, 210095 China.
Yunfeng Song2College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
Xiaojiang Li2College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
Junhao Chen3State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, 311300 China.ORCID 0000-0002-7375-0211
Lan Mo3State Key Laboratory of Subtropical Silviculture, School of Forestry and Biotechnology, Zhejiang A&F University, Hangzhou, 311300 China.
Xingtan Zhang2College of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002 China.
Zhenguo Lin4Department of Biology, Saint Louis University, St. Louis, MO 63103 USA.ORCID 0000-0002-8400-9138
Liangsheng ZhangFujian Provincial Key Laboratory of Haixia Applied Plant Systems Biology and Quality Science and Processing Technology in Special Starch, Key Laboratory of Ministry of Education for Genetics & Breeding and Multiple Utilization of Crops, College of Crop Science, Fuzhou, China.
Fujian Agriculture and Forestry University · CNZhejiang A & F University · CNNanjing Agricultural University · CNUniversity of Missouri–St. Louis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horticultural plants play various and critical roles for humans by providing fruits, vegetables, materials for beverages, and herbal medicines and by acting as ornamentals. They have also shaped human art, culture, and environments and thereby have influenced the lifestyles of humans. With the advent of sequencing technologies, there has been a dramatic increase in the number of sequenced genomes of horticultural plant species in the past decade. The genomes of horticultural plants are highly diverse and complex, often with a high degree of heterozygosity and a high ploidy due to their long and complex history of evolution and domestication. Here we summarize the advances in the genome sequencing of horticultural plants, the reconstruction of pan-genomes, and the development of horticultural genome databases. We also discuss past, present, and future studies related to genome sequencing, data storage, data quality, data sharing, and data visualization to provide practical guidance for genomic studies of horticultural plants. Finally, we propose a horticultural plant genome project as well as the roadmap and technical details toward three goals of the project.

Indexed as

Plant molecular biologyStructural variation

Identifiers

PMID31645966
PMCPMC6804536
OpenAlexW2977727682

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.