Evidence map›Paper›PMID 31644907›Full record

ArticleCell reports2019

RAG-Mediated DNA Breaks Attenuate PU.1 Activity in Early B Cells through Activation of a SPIC-BCLAF1 Complex.

Deepti Soodgupta, Lynn S White, Wei Yang, Rachel Johnston, Jared M Andrews, Masako Kohyama, Kenneth M Murphy, Nima Mosammaparast, Jacqueline E Payton, Jeffrey J Bednarski

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. ETS Transcription Factors in Immune Cells and Immune-Related Diseases.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Assessing DNA Damage Responses Using B Lymphocyte Cultures.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Deepti SoodguptaDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Lynn S WhiteDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Wei YangDepartment of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Rachel JohnstonDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jared M AndrewsDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Masako KohyamaDepartment of Immunochemistry, Research Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan.
Kenneth M MurphyDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Nima MosammaparastDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jacqueline E PaytonDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Jeffrey J BednarskiDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO 63110, USA. Electronic address: bednarski_j@wustl.edu.
Washington University in St. Louis · USOsaka University · JP

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
High-throughput targeted mutagenesis of mouse stem cell linesU01HG004080 · NHGRI · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI DE JONG, PIETER J. · 2006 to 2010
$28.1M
Production of Targeted Null Mutations for 10,000 Genes in C57BL/6 ES CellsU01HG004085 · NHGRI · REGENERON PHARMACEUTICALS, INC. · PI VALENZUELA, DAVID MANUEL · 2006 to 2010
$25.3M
Washington University Institute of Clinical and Translational Sciences (KL2) KL2TR002346 · NCATS · WASHINGTON UNIVERSITY · PI Dominic N Reeds · 2017 to 2026
$14.0M
MECHANISM AND REGULATION OF THE DNA ALKYLATION DAMAGE RESPONSER01CA193318 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2015 to 2024
$3.6M
A SIGNALING PATHWAY SPECIFIC FOR ALKYLATION DAMAGER01CA227001 · NCI · WASHINGTON UNIVERSITY · PI MOSAMMAPARAST, NIMA · 2018 to 2022
$1.8M
SEQUENCE-SPECIFIC CHROMATIN MODIFIERS; NOVEL PROTEIN THERAPEUTICS FOR B CELL LYMPHOMAR01CA188286 · NCI · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M, PAYTON, JACQUELINE E. · 2015 to 2019
$1.7M
INTEGRATION OF DNA DAMAGE RESPONSES WITH IMMUNE DEVELOPMENT AND FUNCTIONK08AI102946 · NIAID · WASHINGTON UNIVERSITY · PI BEDNARSKI, JEFFREY J · 2012 to 2016
$634k
Role of DNA Damage Responses in Immune Development and FunctionR56AI153234 · NIAID · WASHINGTON UNIVERSITY · PI BEDNARSKI, JEFFREY J · 2020 to 2020
$315k
NCATS NIH HHS KL2 TR002346NCATS NIH HHS UL1 TR000448NCATS NIH HHS UL1 TR002345NCI NIH HHS P01 CA092584NCI NIH HHS P30 CA091842NCI NIH HHS R01 CA188286NCI NIH HHS R01 CA193318NCI NIH HHS R01 CA227001NHGRI NIH HHS U01 HG004080NHGRI NIH HHS U01 HG004085NIAID NIH HHS K08 AI102946NIAID NIH HHS R56 AI153234
6 · The paper itself

Abstract

Early B cell development is regulated by stage-specific transcription factors. PU.1, an ETS-family transcription factor, is essential for coordination of early B cell maturation and immunoglobulin gene (Ig) rearrangement. Here we show that RAG DNA double-strand breaks (DSBs) generated during Ig light chain gene (Igl) rearrangement in pre-B cells induce global changes in PU.1 chromatin binding. RAG DSBs activate a SPIC/BCLAF1 transcription factor complex that displaces PU.1 throughout the genome and regulates broad transcriptional changes. SPIC recruits BCLAF1 to gene-regulatory elements that control expression of key B cell developmental genes. The SPIC/BCLAF1 complex suppresses expression of the SYK tyrosine kinase and enforces the transition from large to small pre-B cells. These studies reveal that RAG DSBs direct genome-wide changes in ETS transcription factor activity to promote early B cell development.

Indexed as

Cell DifferentiationDNA Breaks, Double-StrandedAnimalsB-LymphocytesCells, CulturedChromatinDNA-Binding ProteinsFemaleHomeodomain ProteinsMaleMiceMice, Inbred C57BLProtein BindingProto-Oncogene ProteinsProto-Oncogene Protein Spi-1Repressor ProteinsBclaf1 protein, mouseChromatinDNA-Binding ProteinsHomeodomain ProteinsProto-Oncogene ProteinsProto-Oncogene Protein Spi-1RAG-1 proteinRag2 protein, mouseRepressor ProteinsSpic protein, mouseSyk KinaseTrans-ActivatorsB cell developmentBCLAF1 transcription factorDNA damage responsepre-B cellsPU.1 transcription factorRAGSPIC transcription factor

Identifiers

PMID31644907
PMCPMC6870970
OpenAlexW2981824828

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.