Evidence map›Paper›PMID 31644900›Full record

ArticleCell reports2019

Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration.

Daria D Korotkova, Vassily A Lyubetsky, Anastasia S Ivanova, Lev I Rubanov, Alexander V Seliverstov, Oleg A Zverkov, Natalia Yu Martynova, Alexey M Nesterenko, Maria B Tereshina, Leonid Peshkin and 1 more

Abstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. The subfunctionalization ofFrontiers in cell and developmental biology · 2025
    Article
  3. The emergence ofFrontiers in cell and developmental biology · 2025
    Article
  4. Review
  5. The Change Rate of theBiology · 2024
    Article
  6. Article
  7. Article
  8. MAPK/ERK Pathway as a Central Regulator in Vertebrate Organ Regeneration.International journal of molecular sciences · 2022
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Daria D KorotkovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences (IBCH RAS), 16/10 Miklukho-Maklaya str., Moscow 117997, Russia.
Vassily A LyubetskyThe Institute for Information Transmission Problems, Russian Academy of Sciences (IITP RAS), 19 Bolshoy Karetny str., Moscow 127051, Russia.
Anastasia S IvanovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences (IBCH RAS), 16/10 Miklukho-Maklaya str., Moscow 117997, Russia.
Lev I RubanovThe Institute for Information Transmission Problems, Russian Academy of Sciences (IITP RAS), 19 Bolshoy Karetny str., Moscow 127051, Russia.
Alexander V SeliverstovThe Institute for Information Transmission Problems, Russian Academy of Sciences (IITP RAS), 19 Bolshoy Karetny str., Moscow 127051, Russia.
Oleg A ZverkovThe Institute for Information Transmission Problems, Russian Academy of Sciences (IITP RAS), 19 Bolshoy Karetny str., Moscow 127051, Russia.
Natalia Yu MartynovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences (IBCH RAS), 16/10 Miklukho-Maklaya str., Moscow 117997, Russia.
Alexey M NesterenkoShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences (IBCH RAS), 16/10 Miklukho-Maklaya str., Moscow 117997, Russia; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, 1/40 Leninskie Gory, Moscow 119991, Russia.
Maria B TereshinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences (IBCH RAS), 16/10 Miklukho-Maklaya str., Moscow 117997, Russia.
Leonid PeshkinDepartment of Systems Biology, Harvard Medical School, Boston, MA 02115, USA.
Andrey G ZaraiskyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences (IBCH RAS), 16/10 Miklukho-Maklaya str., Moscow 117997, Russia. Electronic address: azaraisky@yahoo.com.

Funding

Systems Analysis of cell type differentiation in Xenopus developmentR01HD073104 · NICHD · HARVARD MEDICAL SCHOOL · PI KIRSCHNER, MARC WALLACE, PESHKIN, LEON · 2012 to 2022
$6.7M
NICHD NIH HHS R01 HD073104
6 · The paper itself

Abstract

The molecular basis of higher regenerative capacity of cold-blooded animals comparing to warm-blooded ones is poorly understood. Although this difference in regenerative capacities is commonly thought to be a result of restructuring of the same regulatory gene network, we hypothesized that it may be due to loss of some genes essential for regeneration. We describe here a bioinformatic method that allowed us to identify such genes. For investigation in depth we selected one of them encoding transmembrane protein, named "c-Answer." Using the Xenopus laevis frog as a model cold-blooded animal, we established that c-Answer regulates regeneration of body appendages and telencephalic development through binding to fibroblast growth factor receptors (FGFRs) and P2ry1 receptors and promoting MAPK/ERK and purinergic signaling. This suggests that elimination of c-answer in warm-blooded animals could lead to decreased activity of at least two signaling pathways, which in turn might contribute to changes in mechanisms regulating regeneration and telencephalic development.

Indexed as

Gene Expression Regulation, DevelopmentalNeurogenesisRegenerationAnimalsBrainComputational BiologyMAP Kinase Signaling SystemReceptors, Fibroblast Growth FactorReceptors, Purinergic P2Y1Xenopus laevisReceptors, Fibroblast Growth FactorReceptors, Purinergic P2Y1bioinformatics screeningFGF signalingforebraingenes extinctiongenome evolutionpurinergic signalingregeneration

Identifiers

PMID31644900
PMCPMC6871517

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.