Evidence map›Paper›PMID 31644597›Full record

ArticlePloS one2019

Candidate genes expression profiling during wilting in chickpea caused by Fusarium oxysporum f. sp. ciceris race 5.

Cristina Caballo, Patricia Castro, Juan Gil, Teresa Millan, Josefa Rubio, Jose V Die

Abstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Identification and characterization of theFrontiers in plant science · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Performance appraisal ofFrontiers in plant science · 2022
    Article
  11. Genomic Regions Associated with Fusarium Wilt Resistance in Flax.International journal of molecular sciences · 2021
    Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Cristina CaballoÁrea de Genómica y Biotecnología, IFAPA, Alameda del Obispo, Córdoba, Spain.ORCID 0000-0002-9399-976X
Patricia CastroDepartment of Genetics - ETSIAM, University of Córdoba, Campus de Rabanales, Córdoba, Spain.
Juan GilDepartment of Genetics - ETSIAM, University of Córdoba, Campus de Rabanales, Córdoba, Spain.
Teresa MillanDepartment of Genetics - ETSIAM, University of Córdoba, Campus de Rabanales, Córdoba, Spain.
Josefa RubioÁrea de Genómica y Biotecnología, IFAPA, Alameda del Obispo, Córdoba, Spain.
Jose V DieDepartment of Genetics - ETSIAM, University of Córdoba, Campus de Rabanales, Córdoba, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chickpea production may be seriously threatened by Fusarium wilt, a disease caused by the soil-borne fungus Fusarium oxysporum f. sp. ciceris. F. oxysporum race 5 is the most important race in the Mediterranean basin. Recently, the region responsible for resistance race 5 has been delimited within a region on chromosome 2 that spans 820 kb. To gain a better understanding of this genomic region, we used a transcriptomic approach based on quantitative real-time PCR to analyze the expression profiles of 22 selected candidate genes. We used a pair of near-isogenic lines (NILs) differing in their sensitivity to Fusarium race 5 (resistant vs susceptible) to monitor the transcriptional changes over a time-course experiment (24, 48, and 72 hours post inoculation, hpi). Qualitative differences occurred during the timing of regulation. A cluster of 12 genes were induced by the resistant NIL at 24 hpi, whereas a second cluster contained 9 genes induced by the susceptible NIL at 48 hpi. Their possible functions in the molecular defence of chickpea is discussed. Our study provides new insight into the molecular defence against Fusarium race 5 and demonstrates that development of NILs is a rich resource to facilitate the detection of candidate genes. The new genes regulated here may be useful against other Fusarium races.

Indexed as

Gene Expression ProfilingHost-Pathogen InteractionsCicerFusariumGene Expression Regulation, PlantImmunity, InnatePlant DiseasesPlant ProteinsPlant RootsPlant Proteins

Identifiers

PMID31644597
PMCPMC6808423

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.