ArticleNucleic acids research2020
SilkDB 3.0: visualizing and exploring multiple levels of data for silkworm.
Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.
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Who cites it
62 citing papers in PubMed.
- Article
- Genome-wide identification and immunological expression analysis of the C3HC4-type zinc finger protein genes in the silkworm, Bombyx Mori.BMC genomics · 2026Article
- CRISPR-Mediated Silkworm: The Oncoming Agricultural Revolutions and a Rising Model Organism.Genes · 2026Review
- Article
- InsectBase 3.0: a comprehensive multi-omics resource for insects.Nucleic acids research · 2026Article
- Reproductive Barriers and Genomic Hotspots of Adaptation During Allopatric Species Divergence.Molecular ecology · 2025Article
- TSSKL is essential for sperm mitochondrial morphogenesis and male fertility in moths.PLoS genetics · 2025Article
- Dosage-dependent regulation of embryonic diapause by sorbitol dehydrogenase in the silkworm, Bombyx mori.PLoS genetics · 2025Article
- Evolutionary Dynamics of Glycoside Hydrolase Family 1 Provide Insights into Insect-Plant Interactions in Lepidoptera.Insects · 2025Article
- DIGITtally-a new tool for streamlining and simplifying Drosophila melanogaster meta-analysis.Nucleic acids research · 2025Article
- Unraveling developmental gene regulation in holometabolous insects through comparative transcriptomics and proteomics.Communications biology · 2025Article
- A chromosome-level genome assembly of beet webworm, Loxostege sticticalis Linnaeus (Lepidoptera: Pyralidae).Scientific data · 2025Article
- Characterization of Spectrin Family Genes and Their Evolutionary Roles in Domestication and Breeding of the SilkwormInsects · 2025Article
- CRISPR/Cas9-Mediated Knockout ofInsects · 2025Article
- 20-Hydroxyecdysone Regulates the Expression of 30 Genes Specifically Expressed in Larval Digestive Tube of the Silkworm,Insects · 2025Article
- Insufficient wing development possibly contributes to flightlessness of the silkwormProceedings. Biological sciences · 2025Article
- Attraction and aversion of noctuid moths to fermented food sources coordinated by olfactory receptors from distinct gene families.BMC biology · 2025Article
- Chromosome-level genome assembly of a destructive leaf-mining moth Eriocrania semipurpurella alpina.Scientific data · 2025Article
- Genome-wide association study of cocoon-producing traits in four Henan silkworm strains revealed new candidate genes.Frontiers in genetics · 2025Article
- Article
2 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
SilkDB is an open-accessibility database and powerful platform that provides comprehensive information on the silkworm (Bombyx mori) genome. Since SilkDB 2.0 was released 10 years ago, vast quantities of data about multiple aspects of the silkworm have been generated, including genome, transcriptome, Hi-C and pangenome. To visualize data at these different biological levels, we present SilkDB 3.0 (https://silkdb.bioinfotoolkits.net), a visual analytic tool for exploring silkworm data through an interactive user interface. The database contains a high-quality chromosome-level assembly of the silkworm genome, and its coding sequences and gene sets are more accurate than those in the previous version. SilkDB 3.0 provides a view of the information for each gene at the levels of sequence, protein structure, gene family, orthology, synteny, genome organization and gives access to gene expression information, genetic variation and genome interaction map. A set of visualization tools are available to display the abundant information in the above datasets. With an improved interactive user interface for the integration of large data sets, the updated SilkDB 3.0 database will be a valuable resource for the silkworm and insect research community.
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