Evidence map›Paper›PMID 31642470›Full record

ArticleNucleic acids research2020

WormBase: a modern Model Organism Information Resource.

Todd W Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J Chen, Jaehyoung Cho, Paul Davis, Sibyl Gao, Christian A Grove, Ranjana Kishore and 18 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 211 papers.

0numbers the graph read from it
0cells of the map it votes in
211citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

211 citing papers in PubMed.

  1. Article
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  6. A pilot study for whole proteome tagging inbioRxiv : the preprint server for biology · 2026
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  7. Single-Cell Proteomics Decodes the Cellular Response to Lysosomal Storage inInternational journal of molecular sciences · 2026
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  10. Persistent effects of early-life arsenic exposure inEnvironmental science. Processes & impacts · 2026
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  11. Article
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  13. SLBP-independent control of maternal histone mRNA.bioRxiv : the preprint server for biology · 2026
    Article
  14. UNCP-18 is amicroPublication biology · 2026
    Article
  15. Article
  16. Parasitology · 2025
    Article
  17. Rewarding touch limits lifespan through neural to intestinal signaling.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Genome-Wide Inference of Essential Genes inInternational journal of molecular sciences · 2025
    Article
  19. The impact of rearing environment onbioRxiv : the preprint server for biology · 2025
    Article
  20. Article

151 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Todd W HarrisInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Valerio ArnaboldiDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Scott CainInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Juancarlos ChanDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Wen J ChenDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Jaehyoung ChoDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Paul DavisEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Sibyl GaoInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Christian A GroveDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Ranjana KishoreDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Raymond Y N LeeDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Hans-Michael MullerDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Cecilia NakamuraDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Paulo NuinInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Michael PauliniEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Daniela RacitiDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Faye H RodgersWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK.
Matthew RussellEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Gary SchindelmanDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Kimberly V AukenDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Qinghua WangDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Gary WilliamsEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Adam J WrightInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Karen YookDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.
Kevin L HoweEuropean Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Tim SchedlDepartment of Genetics, Washington University School of Medicine, St Louis, MO 63110, USA.
Lincoln SteinInformatics and Bio-computing Platform, Ontario Institute for Cancer Research, Toronto, ON M5G0A3, Canada.
Paul W SternbergDivision of Biology and Biological Engineering 156-29, California Institute of Technology, Pasadena, CA 91125, USA.

Funding

WormBase: a core data resource for C. elegans and other nematodesU24HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI TIM SCHEDL, PAUL Warren STERNBERG · 2018 to 2026
$18.9M
Biotechnology and Biological Sciences Research Council BB/P024602/1Medical Research Council MR/S000453/1NHGRI NIH HHS U24 HG002223
6 · The paper itself

Abstract

WormBase (https://wormbase.org/) is a mature Model Organism Information Resource supporting researchers using the nematode Caenorhabditis elegans as a model system for studies across a broad range of basic biological processes. Toward this mission, WormBase efforts are arranged in three primary facets: curation, user interface and architecture. In this update, we describe progress in each of these three areas. In particular, we discuss the status of literature curation and recently added data, detail new features of the web interface and options for users wishing to conduct data mining workflows, and discuss our efforts to build a robust and scalable architecture by leveraging commercial cloud offerings. We conclude with a description of WormBase's role as a founding member of the nascent Alliance of Genome Resources.

Indexed as

Databases, GeneticGenes, HelminthAnimalsCaenorhabditis elegansData MiningGenomicsInternetUser-Computer Interface

Identifiers

PMID31642470
PMCPMC7145598

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.