Evidence map›Paper›PMID 31642055›Full record

ArticleThe New phytologist2020

Convergent evolution of the UbiA prenyltransferase family underlies the independent acquisition of furanocoumarins in plants.

Ryosuke Munakata, Sakihito Kitajima, Andréïna Nuttens, Kanade Tatsumi, Tomoya Takemura, Takuji Ichino, Gianni Galati, Sonia Vautrin, Hélène Bergès, Jérémy Grosjean and 4 more

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 53 citations in OpenAlex.

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  11. The chromosome-scale assembly of theActa pharmaceutica Sinica. B · 2024
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  15. Bioengineering of the Marine DiatomInternational journal of molecular sciences · 2023
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  18. ACS omega · 2022
    Article
  19. Article
  20. Parallel evolution of UbiA superfamily proteins into aromaticProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Ryosuke MunakataLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID 0000-0002-7888-6281
Sakihito KitajimaDepartment of Applied Biology, Kyoto Institute of Technology, Matsugasaki Sakyo-ku, Kyoto, 606-8585, Japan.ORCID 0000-0002-9840-6708
Andréïna NuttensUniversité de Lorraine, INRA, LAE, F54000, Nancy, France.ORCID 0000-0003-0723-3547
Kanade TatsumiLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Tomoya TakemuraLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.
Takuji IchinoLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID 0000-0001-9058-5660
Gianni GalatiUniversité de Lorraine, INRA, LAE, F54000, Nancy, France.ORCID 0000-0002-4241-7782
Sonia VautrinCentre National de Ressources Genomiques Vegetales - INRA, 24 Chemin de Borde Rouge, Auzeville CS 52627, 31326, Castanet Tolosan Cedex, France.ORCID 0000-0003-4446-1426
Hélène BergèsCentre National de Ressources Genomiques Vegetales - INRA, 24 Chemin de Borde Rouge, Auzeville CS 52627, 31326, Castanet Tolosan Cedex, France.ORCID 0000-0002-5492-1062
Jérémy GrosjeanUniversité de Lorraine, INRA, LAE, F54000, Nancy, France.ORCID 0000-0002-1972-2180
Frédéric BourgaudPlant Advanced Technologies - PAT, 19 Avenue de la forêt de Haye, 54500, Vandoeuvre, France.ORCID 0000-0002-9898-2625
Akifumi SugiyamaLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID 0000-0002-9643-6639
Alain HehnUniversité de Lorraine, INRA, LAE, F54000, Nancy, France.ORCID 0000-0003-4507-8031
Kazufumi YazakiLaboratory of Plant Gene Expression, Research Institute for Sustainable Humanosphere, Kyoto University, Uji, Kyoto, 611-0011, Japan.ORCID 0000-0003-2523-6418
Kyoto University · JPLaboratoire Agronomie et EnvironnementLaboratoire de Recherche en Sciences Végétales · FRKyoto Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Furanocoumarins (FCs) are plant-specialized metabolites with potent allelochemical properties. The distribution of FCs is scattered with a chemotaxonomical tendency towards four distant families with highly similar FC pathways. The mechanism by which this pathway emerged and spread in plants has not been elucidated. Furanocoumarin biosynthesis was investigated in Ficus carica (fig, Moraceae), focusing on the first committed reaction catalysed by an umbelliferone dimethylallyltransferase (UDT). Comparative RNA-seq analysis among latexes of different fig organs led to the identification of a UDT. The phylogenetic relationship of this UDT to previously reported Apiaceae UDTs was evaluated. The expression pattern of F. carica prenyltransferase 1 (FcPT1) was related to the FC contents in different latexes. Enzymatic characterization demonstrated that one of the main functions of FcPT1 is UDT activity. Phylogenetic analysis suggested that FcPT1 and Apiaceae UDTs are derived from distinct ancestors, although they both belong to the UbiA superfamily. These findings are supported by significant differences in the related gene structures. This report describes the identification of FcPT1 involved in FC biosynthesis in fig and provides new insights into multiple origins of the FC pathway and, more broadly, into the adaptation of plants to their environments.

Indexed as

DimethylallyltranstransferaseFicusFurocoumarinsLatexPhylogenyDimethylallyltranstransferaseFurocoumarinsLatexconvergent evolutionfig (Ficus carica)furanocoumarinlatexMoraceaeprenyltransferaseUbiA superfamily

Identifiers

PMID31642055
PMCPMC7028039
OpenAlexW2982055440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.