Evidence map›Paper›PMID 31642046›Full record

ArticleCell stress & chaperones2019

Genetic profiling of Hsp70 gene in Murrah buffalo (Bubalus bubalis) under sub-tropical climate of India.

Birendra Kumar, Ajit Kumar Sahoo, Shanker Dayal, Ananta Kumar Das, Subhash Taraphder, Subhasis Batabyal, Pradeep Kumar Ray, Rajni Kumari

Open access · bronzeAbstract read
In one paragraph

Article in Cell stress & chaperones, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Birendra KumarDepartment of Animal Genetics and Breeding, Faculty of Veterinary and Animal Sciences, West Bengal University of Animal and Fishery Sciences, Mohanpur, Nadia, West Bengal, 741252, India.
Ajit Kumar SahooDepartment of Animal Genetics and Breeding, Faculty of Veterinary and Animal Sciences, West Bengal University of Animal and Fishery Sciences, Mohanpur, Nadia, West Bengal, 741252, India.
Shanker DayalDivision of Livestock and Fishery Management, ICAR-Research Complex for Eastern Region, Patna, Bihar, 800014, India.
Ananta Kumar DasDepartment of Animal Genetics and Breeding, Faculty of Veterinary and Animal Sciences, West Bengal University of Animal and Fishery Sciences, Mohanpur, Nadia, West Bengal, 741252, India. dasugenvet@gmail.com.ORCID https://orcid.org/0000-0002-5397-906X
Subhash TaraphderDepartment of Animal Genetics and Breeding, Faculty of Veterinary and Animal Sciences, West Bengal University of Animal and Fishery Sciences, Mohanpur, Nadia, West Bengal, 741252, India.
Subhasis BatabyalDepartment of Veterinary Biochemistry, Faculty of Veterinary and Animal Sciences, West Bengal University of Animal and Fishery Sciences, Mohanpur, Nadia, West Bengal, 741252, India.
Pradeep Kumar RayDivision of Livestock and Fishery Management, ICAR-Research Complex for Eastern Region, Patna, Bihar, 800014, India.
Rajni KumariDivision of Livestock and Fishery Management, ICAR-Research Complex for Eastern Region, Patna, Bihar, 800014, India.
West Bengal University of Animal and Fishery Sciences · INICAR Research Complex for NEH Region · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study was aimed to genetic profiling of heat shock protein 70 (Hsp70) gene in Murrah buffalo investigating 50 unrelated adult animals at ICAR-Research Complex for Eastern Region, Patna (India) in winter, spring, and summer. PCR ready genomic DNA samples and season-wise total RNA samples were prepared. The PCR products of Hsp70 eluted from agarose gel were sequenced and analyzed. The first-strand cDNA was synthesized and concentration was equalized to 25 ng/μl. Expression kinetics of mRNA transcripts in different seasons was studied using Brilliant SYBR Green QPCR technique and the data retrieved was analyzed by least-squares ANOVA. DNA sequencing by primer walking revealed four allelic variants of Hsp70 gene. Alignment study revealed one substitution in 5'UTR, six substitutions in coding region, and one addition in 3'UTR. The highest percent identity and negligible phylogenetic distance were found among the alleles and reference bovine sequences. The relative mRNA expression was significantly higher in summer when THI ≥ 84 than the spring and winter; fold change increased by 4.5 times in summer than the spring whereas found nearly half in winter. These findings can be useful for heat stress management in buffaloes and help in understanding the mechanism of thermo-regulation well.

Indexed as

BuffaloesHSP70 Heat-Shock ProteinsAnimalsGene ExpressionGene Expression ProfilingHeat-Shock ResponseHot TemperatureIndiaSeasonsTropical ClimateHSP70 Heat-Shock ProteinsHsp70 genemRNA expressionMurrah buffaloPolymorphismSNP

Identifiers

PMID31642046
PMCPMC6883022
OpenAlexW2981415996

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.