Evidence map›Paper›PMID 31641996›Full record

ArticleMolecular biotechnology2019

An Alternative Hot Start PCR Method Using a Nuclease-Deficient ExoIII from Escherichia coli.

Shuhong Lu, Xuesong Zhang, Kaiying Chen, Bingbin Xie, Dapeng Shan, Yulong Shen, Zhuo Li

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 90% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shuhong LuCollege of Ocean and Earth Sciences, Xiamen University, Xiamen, 361102, Fujian, China.
Xuesong ZhangThird Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, 361005, Fujian, China.
Kaiying ChenThird Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, 361005, Fujian, China.
Bingbin XieThird Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, 361005, Fujian, China.
Dapeng ShanThird Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, 361005, Fujian, China.
Yulong ShenState Key Laboratory of Microbial Technology, Shandong University, Qingdao, 266237, Shandong, China.
Zhuo LiThird Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, 361005, Fujian, China. lizhuo@tio.org.cn.ORCID http://orcid.org/0000-0003-3453-5903
Ministry of Natural Resources · CNShandong University · CNXiamen University · CN

Funding

Young Scientists Fund 31500027
6 · The paper itself

Abstract

The Hot Start polymerase chain reaction (Hot Start PCR) is designed to reduce off-target amplification by blocking DNA polymerase extension at room temperature until the desired temperature is reached. In this study, we investigated a new method of Hot Start PCR that uses a modified Escherichia coli Exonuclease III (EcoExoIIIM) by substituting residues in the DNA-binding pocket and catalytic center. The results showed that PCR amplification yield and specificity were significantly promoted by the addition of EcoExoIIIM. We hypothesize that non-specific binding of primers at room temperature is prevented by binding of the primed template by EcoExoIIIM, which is then released from the DNA by heat denaturation before the first PCR cycle. Through this mechanism, PCR would be enhanced by reducing off-target extension at room temperature.

Indexed as

DNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA PrimersEscherichia coliExodeoxyribonucleasesHot TemperatureMutationPolymerase Chain ReactionTemperatureDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA Primersexodeoxyribonuclease IIIExodeoxyribonucleasesExonuclease IIIHot startPolymerase chain reaction

Identifiers

PMID31641996
OpenAlexW2981808224

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.